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High-performance web services for querying gene and variant annotation

by Griffith, Obi L. , Ainscough, Benjamin J. , Su, Andrew I. , Tsueng, Ginger , Whetzel, Patricia L. , Torkamani, Ali , Mungall, Christopher J. , Mark, Adam , Putman, Timothy E. , Gopal, Nikhil , Wu, Chunlei , Mooney, Sean D. , Xin, Jiwen , Afrasiabi, Cyrus , Juchler, Moritz , Stupp, Gregory S.

in Acids / Animal Genetics and Genomics / Annotation / Annotations / API / BASIC BIOLOGICAL SCIENCES / Bioinformatics / Biomedical and Life Sciences / Biotechnology & Applied Microbiology / Cloud / Database Management Systems / Databases, Genetic / Evolutionary Biology / Gene / Genes / Genetic diversity / Genetic Variation / Genetics & Heredity / Genomes / Human Genetics / Humans / information management / Internet / Internet service providers / Life Sciences / MATHEMATICS AND COMPUTING / Microbial Genetics and Genomics / Molecular Sequence Annotation / Mutation / Plant Genetics and Genomics / Queries / Repository / Sequence Analysis, DNA / Software / User-Computer Interface / Variant

2016

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High-performance web services for querying gene and variant annotation

2016

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2016

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Journal Article

High-performance web services for querying gene and variant annotation

Griffith, Obi L.,

Ainscough, Benjamin J.,

Su, Andrew I.,

Tsueng, Ginger,

Whetzel, Patricia L.,

Torkamani, Ali,

Mungall, Christopher J.,

Mark, Adam,

Putman, Timothy E.,

Gopal, Nikhil,

Wu, Chunlei,

Mooney, Sean D.,

Xin, Jiwen,

Afrasiabi, Cyrus,

Juchler, Moritz,

Stupp, Gregory S.

2016

Overview

Efficient tools for data management and integration are essential for many aspects of high-throughput biology. In particular, annotations of genes and human genetic variants are commonly used but highly fragmented across many resources. Here, we describe MyGene.info and MyVariant.info, high-performance web services for querying gene and variant annotation information. These web services are currently accessed more than three million times per month. They also demonstrate a generalizable cloud-based model for organizing and querying biological annotation information. MyGene.info and MyVariant.info are provided as high-performance web services, accessible at http://mygene.info and http://myvariant.info . Both are offered free of charge to the research community.

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Publisher

BioMed Central,Springer Nature B.V

Subject

Acids

/ Animal Genetics and Genomics

/ Annotation

/ Annotations

/ API

/ BASIC BIOLOGICAL SCIENCES

/ Bioinformatics