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Genome-Wide Analysis of the AP2/ERF Gene Family in Physic Nut and Overexpression of the JcERF011 Gene in Rice Increased Its Sensitivity to Salinity Stress
by
Guo, Yali
, Chen, Yanbo
, Chen, Yaping
, Wu, Guojiang
, Li, Meiru
, Jiang, Huawu
, Wu, Pingzhi
, Qin, Shanshan
, Tang, Yuehui
in
Abiotic stress
/ Adaptation, Physiological - genetics
/ Amino Acid Sequence
/ Arabidopsis
/ Arabidopsis thaliana
/ Biology and Life Sciences
/ Botanical gardens
/ Chromosomes, Plant - genetics
/ Drought
/ Ecology and Environmental Sciences
/ Evolution
/ Exons - genetics
/ Flowers & plants
/ Gene expression
/ Gene Expression Regulation, Plant
/ Genes
/ Genes, Plant
/ Genetic aspects
/ Genetic Linkage
/ Genome, Plant
/ Genomes
/ Glycine max
/ Introns - genetics
/ Jatropha - genetics
/ Jatropha curcas
/ Laboratories
/ Leaves
/ Metabolism
/ Molecular Sequence Data
/ Multigene Family
/ Nucleotide Motifs - genetics
/ Oryza
/ Oryza - genetics
/ Oryza - physiology
/ Oryza sativa
/ Phosphate starvation response
/ Phosphates
/ Phylogenetics
/ Phylogeny
/ Physical Sciences
/ Physiological aspects
/ Plant growth
/ Plant Proteins - chemistry
/ Plant Proteins - genetics
/ Plant Proteins - metabolism
/ Plant tissues
/ Plants (botany)
/ Plants, Genetically Modified
/ Proteins
/ Reproduction (copying)
/ Research and Analysis Methods
/ Rice
/ Ricinus communis
/ Roots
/ Salinity
/ Salinity effects
/ Salt tolerance
/ Salts
/ Sensitivity
/ Sequence Alignment
/ Soil salinity
/ Sorghum
/ Starvation
/ Stress, Physiological - genetics
/ Stresses
/ Subgroups
/ Transcription factors
2016
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Genome-Wide Analysis of the AP2/ERF Gene Family in Physic Nut and Overexpression of the JcERF011 Gene in Rice Increased Its Sensitivity to Salinity Stress
by
Guo, Yali
, Chen, Yanbo
, Chen, Yaping
, Wu, Guojiang
, Li, Meiru
, Jiang, Huawu
, Wu, Pingzhi
, Qin, Shanshan
, Tang, Yuehui
in
Abiotic stress
/ Adaptation, Physiological - genetics
/ Amino Acid Sequence
/ Arabidopsis
/ Arabidopsis thaliana
/ Biology and Life Sciences
/ Botanical gardens
/ Chromosomes, Plant - genetics
/ Drought
/ Ecology and Environmental Sciences
/ Evolution
/ Exons - genetics
/ Flowers & plants
/ Gene expression
/ Gene Expression Regulation, Plant
/ Genes
/ Genes, Plant
/ Genetic aspects
/ Genetic Linkage
/ Genome, Plant
/ Genomes
/ Glycine max
/ Introns - genetics
/ Jatropha - genetics
/ Jatropha curcas
/ Laboratories
/ Leaves
/ Metabolism
/ Molecular Sequence Data
/ Multigene Family
/ Nucleotide Motifs - genetics
/ Oryza
/ Oryza - genetics
/ Oryza - physiology
/ Oryza sativa
/ Phosphate starvation response
/ Phosphates
/ Phylogenetics
/ Phylogeny
/ Physical Sciences
/ Physiological aspects
/ Plant growth
/ Plant Proteins - chemistry
/ Plant Proteins - genetics
/ Plant Proteins - metabolism
/ Plant tissues
/ Plants (botany)
/ Plants, Genetically Modified
/ Proteins
/ Reproduction (copying)
/ Research and Analysis Methods
/ Rice
/ Ricinus communis
/ Roots
/ Salinity
/ Salinity effects
/ Salt tolerance
/ Salts
/ Sensitivity
/ Sequence Alignment
/ Soil salinity
/ Sorghum
/ Starvation
/ Stress, Physiological - genetics
/ Stresses
/ Subgroups
/ Transcription factors
2016
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Genome-Wide Analysis of the AP2/ERF Gene Family in Physic Nut and Overexpression of the JcERF011 Gene in Rice Increased Its Sensitivity to Salinity Stress
by
Guo, Yali
, Chen, Yanbo
, Chen, Yaping
, Wu, Guojiang
, Li, Meiru
, Jiang, Huawu
, Wu, Pingzhi
, Qin, Shanshan
, Tang, Yuehui
in
Abiotic stress
/ Adaptation, Physiological - genetics
/ Amino Acid Sequence
/ Arabidopsis
/ Arabidopsis thaliana
/ Biology and Life Sciences
/ Botanical gardens
/ Chromosomes, Plant - genetics
/ Drought
/ Ecology and Environmental Sciences
/ Evolution
/ Exons - genetics
/ Flowers & plants
/ Gene expression
/ Gene Expression Regulation, Plant
/ Genes
/ Genes, Plant
/ Genetic aspects
/ Genetic Linkage
/ Genome, Plant
/ Genomes
/ Glycine max
/ Introns - genetics
/ Jatropha - genetics
/ Jatropha curcas
/ Laboratories
/ Leaves
/ Metabolism
/ Molecular Sequence Data
/ Multigene Family
/ Nucleotide Motifs - genetics
/ Oryza
/ Oryza - genetics
/ Oryza - physiology
/ Oryza sativa
/ Phosphate starvation response
/ Phosphates
/ Phylogenetics
/ Phylogeny
/ Physical Sciences
/ Physiological aspects
/ Plant growth
/ Plant Proteins - chemistry
/ Plant Proteins - genetics
/ Plant Proteins - metabolism
/ Plant tissues
/ Plants (botany)
/ Plants, Genetically Modified
/ Proteins
/ Reproduction (copying)
/ Research and Analysis Methods
/ Rice
/ Ricinus communis
/ Roots
/ Salinity
/ Salinity effects
/ Salt tolerance
/ Salts
/ Sensitivity
/ Sequence Alignment
/ Soil salinity
/ Sorghum
/ Starvation
/ Stress, Physiological - genetics
/ Stresses
/ Subgroups
/ Transcription factors
2016
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Genome-Wide Analysis of the AP2/ERF Gene Family in Physic Nut and Overexpression of the JcERF011 Gene in Rice Increased Its Sensitivity to Salinity Stress
Journal Article
Genome-Wide Analysis of the AP2/ERF Gene Family in Physic Nut and Overexpression of the JcERF011 Gene in Rice Increased Its Sensitivity to Salinity Stress
2016
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Overview
The AP2/ERF transcription factors play crucial roles in plant growth, development and responses to biotic and abiotic stresses. A total of 119 AP2/ERF genes (JcAP2/ERFs) have been identified in the physic nut genome; they include 16 AP2, 4 RAV, 1 Soloist, and 98 ERF genes. Phylogenetic analysis indicated that physic nut AP2 genes could be divided into 3 subgroups, while ERF genes could be classed into 11 groups or 43 subgroups. The AP2/ERF genes are non-randomly distributed across the 11 linkage groups of the physic nut genome and retain many duplicates which arose from ancient duplication events. The expression patterns of several JcAP2/ERF duplicates in the physic nut showed differences among four tissues (root, stem, leaf, and seed), and 38 JcAP2/ERF genes responded to at least one abiotic stressor (drought, salinity, phosphate starvation, and nitrogen starvation) in leaves and/or roots according to analysis of digital gene expression tag data. The expression of JcERF011 was downregulated by salinity stress in physic nut roots. Overexpression of the JcERF011 gene in rice plants increased its sensitivity to salinity stress. The increased expression levels of several salt tolerance-related genes were impaired in the JcERF011-overexpressing plants under salinity stress.
Publisher
Public Library of Science,Public Library of Science (PLoS)
Subject
/ Adaptation, Physiological - genetics
/ Chromosomes, Plant - genetics
/ Drought
/ Ecology and Environmental Sciences
/ Gene Expression Regulation, Plant
/ Genes
/ Genomes
/ Leaves
/ Nucleotide Motifs - genetics
/ Oryza
/ Phosphate starvation response
/ Plants, Genetically Modified
/ Proteins
/ Research and Analysis Methods
/ Rice
/ Roots
/ Salinity
/ Salts
/ Sorghum
/ Stress, Physiological - genetics
/ Stresses
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