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Sequence and analysis of chromosome 1 of the plant Arabidopsis thaliana

by Feldblyum, Tamara V. , Kaul, Samir , Van Aken, Susan , Li, Joycelyn. H. , Lin, Xiaoying , Shinn, Paul , Liu, Shirley X. , Jenkins, Jennifer , Wu, Dongying , Altafi, Hootan , Miranda, Molly , Araujo, Rina , Cheuk, Rosa F. , Lenz, Catherine A. , White, Owen , Chan, April , Lam, Bao , Nguyen, Michelle , Dunn, Patrick , Dewar, Ken , Hughes, Beth , Nierman, William C. , Tambunga, Gabriel , Kwan, Andrea , Chen, Huaming , Gill, John E. , Khaykin, Elizabeth , Davis, Ronald W. , Kurtz, David B. , Toriumi, Mitsue J. , Koo, Hean L. , Fraser, Claire M. , Conway, Andrew R. , Rizzo, Michael , Maiti, Rama , Buehler, Eugen , Schwartz, Jody R. , Utterback, Teresa , Pai, Grace , Ecker, Joseph R. , Chin, Christina W. , Liu, Zhaoying A. , Tallon, Luke J. , Southwick, Audrey M. , Khan, Shehnaz , Vysotskaia, Valentina S. , Fong, Betty , Feng, JiDong , Conn, Lane , Lee, Jeong M. , Venter, J. Craig , Chao, Qimin , Conway, Aaron B. , Haas, Brian , Johnson-Hopson, Chanda , Luros, Jason S. , Militscher, Jennifer , Palm, Curtis J. , Pham, Paul K. , Vaysberg, Maria , Osborne, Brian I. , Yu, Guixia , Brooks, Shelise Y. , Creasy, Todd H. , Rooney, Timothy , Sun, Hui , Chung, Mike K. , Marziali, Andre , Hansen, Nancy

in Arabidopsis / Arabidopsis - genetics / Arabidopsis thaliana / chromosome 1 / Chromosome Mapping / Chromosomes / cytogenetic analysis / DNA, Plant / Flowering plants / Flowers & plants / Gene Duplication / Genes / genetics / Genome, Plant / Genomics / Humanities and Social Sciences / letters-to-nature / Molecular Sequence Data / multidisciplinary / Multigene Family / Plant Proteins / Plant Proteins - genetics / Ribonucleic acid / RNA / RNA, Transfer / RNA, Transfer - genetics / Science / sequence analysis / snRNA

2000

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Sequence and analysis of chromosome 1 of the plant Arabidopsis thaliana

2000

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2000

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Journal Article

Sequence and analysis of chromosome 1 of the plant Arabidopsis thaliana

Feldblyum, Tamara V.,

Kaul, Samir,

Van Aken, Susan,

Li, Joycelyn. H.,

Lin, Xiaoying,

Shinn, Paul,

Liu, Shirley X.,

Jenkins, Jennifer,

Wu, Dongying,

Altafi, Hootan,

Miranda, Molly,

Araujo, Rina,

Cheuk, Rosa F.,

Lenz, Catherine A.,

White, Owen,

Chan, April,

Lam, Bao,

Nguyen, Michelle,

Dunn, Patrick,

Dewar, Ken,

Hughes, Beth,

Nierman, William C.,

Tambunga, Gabriel,

Kwan, Andrea,

Chen, Huaming,

Gill, John E.,

Khaykin, Elizabeth,

Davis, Ronald W.,

Kurtz, David B.,

Toriumi, Mitsue J.,

Koo, Hean L.,

Fraser, Claire M.,

Conway, Andrew R.,

Rizzo, Michael,

Maiti, Rama,

Buehler, Eugen,

Schwartz, Jody R.,

Utterback, Teresa,

Pai, Grace,

Ecker, Joseph R.,

Chin, Christina W.,

Liu, Zhaoying A.,

Tallon, Luke J.,

Southwick, Audrey M.,

Khan, Shehnaz,

Vysotskaia, Valentina S.,

Fong, Betty,

Feng, JiDong,

Conn, Lane,

Lee, Jeong M.,

Venter, J. Craig,

Chao, Qimin,

Conway, Aaron B.,

Haas, Brian,

Johnson-Hopson, Chanda,

Luros, Jason S.,

Militscher, Jennifer,

Palm, Curtis J.,

Pham, Paul K.,

Vaysberg, Maria,

Osborne, Brian I.,

Yu, Guixia,

Brooks, Shelise Y.,

Creasy, Todd H.,

Rooney, Timothy,

Sun, Hui,

Chung, Mike K.,

Marziali, Andre,

Hansen, Nancy

2000

Overview

The genome of the flowering plant Arabidopsis thaliana has five chromosomes 1 , 2 . Here we report the sequence of the largest, chromosome 1, in two contigs of around 14.2 and 14.6 megabases. The contigs extend from the telomeres to the centromeric borders, regions rich in transposons, retrotransposons and repetitive elements such as the 180-base-pair repeat. The chromosome represents 25% of the genome and contains about 6,850 open reading frames, 236 transfer RNAs (tRNAs) and 12 small nuclear RNAs. There are two clusters of tRNA genes at different places on the chromosome. One consists of 27 tRNA Pro genes and the other contains 27 tandem repeats of tRNA Tyr -tRNA Tyr -tRNA Ser genes. Chromosome 1 contains about 300 gene families with clustered duplications. There are also many repeat elements, representing 8% of the sequence.

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Publisher

Nature Publishing Group UK,Nature Publishing Group

Subject

Arabidopsis

/ Arabidopsis - genetics

/ Arabidopsis thaliana

/ chromosome 1

/ Chromosome Mapping

/ Chromosomes

/ cytogenetic analysis