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A mechanism for initiating RNA-dependent RNA polymerization
by
Butcher, Sarah J.
, Grimes, Jonathan M.
, Stuart, David I.
, Makeyev, Eugeny V.
, Bamford, Dennis H.
in
Bacteriophage phi 6 - enzymology
/ Bacteriophage phi 6 - genetics
/ Biological and medical sciences
/ Crystalline structure
/ Crystallization
/ Crystallography, X-Ray
/ Escherichia coli
/ Evolution
/ Fundamental and applied biological sciences. Psychology
/ Genomics
/ Hepacivirus - enzymology
/ Hepacivirus - genetics
/ Hepatitis
/ Hepatitis C virus
/ Humanities and Social Sciences
/ letter
/ Magnesium - metabolism
/ Manganese - metabolism
/ Models, Molecular
/ Molecular biology
/ Molecular biophysics
/ multidisciplinary
/ Phage h6
/ Protein Conformation
/ Recombinant Proteins - chemistry
/ Recombinant Proteins - metabolism
/ Ribonucleic acid
/ RNA
/ RNA, Double-Stranded - metabolism
/ RNA, Viral - metabolism
/ RNA-Directed DNA Polymerase - chemistry
/ RNA-Directed DNA Polymerase - metabolism
/ Science
/ Science (multidisciplinary)
/ Structure in molecular biology
/ Templates, Genetic
/ Transcription, Genetic
/ Viruses
2001
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A mechanism for initiating RNA-dependent RNA polymerization
by
Butcher, Sarah J.
, Grimes, Jonathan M.
, Stuart, David I.
, Makeyev, Eugeny V.
, Bamford, Dennis H.
in
Bacteriophage phi 6 - enzymology
/ Bacteriophage phi 6 - genetics
/ Biological and medical sciences
/ Crystalline structure
/ Crystallization
/ Crystallography, X-Ray
/ Escherichia coli
/ Evolution
/ Fundamental and applied biological sciences. Psychology
/ Genomics
/ Hepacivirus - enzymology
/ Hepacivirus - genetics
/ Hepatitis
/ Hepatitis C virus
/ Humanities and Social Sciences
/ letter
/ Magnesium - metabolism
/ Manganese - metabolism
/ Models, Molecular
/ Molecular biology
/ Molecular biophysics
/ multidisciplinary
/ Phage h6
/ Protein Conformation
/ Recombinant Proteins - chemistry
/ Recombinant Proteins - metabolism
/ Ribonucleic acid
/ RNA
/ RNA, Double-Stranded - metabolism
/ RNA, Viral - metabolism
/ RNA-Directed DNA Polymerase - chemistry
/ RNA-Directed DNA Polymerase - metabolism
/ Science
/ Science (multidisciplinary)
/ Structure in molecular biology
/ Templates, Genetic
/ Transcription, Genetic
/ Viruses
2001
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A mechanism for initiating RNA-dependent RNA polymerization
by
Butcher, Sarah J.
, Grimes, Jonathan M.
, Stuart, David I.
, Makeyev, Eugeny V.
, Bamford, Dennis H.
in
Bacteriophage phi 6 - enzymology
/ Bacteriophage phi 6 - genetics
/ Biological and medical sciences
/ Crystalline structure
/ Crystallization
/ Crystallography, X-Ray
/ Escherichia coli
/ Evolution
/ Fundamental and applied biological sciences. Psychology
/ Genomics
/ Hepacivirus - enzymology
/ Hepacivirus - genetics
/ Hepatitis
/ Hepatitis C virus
/ Humanities and Social Sciences
/ letter
/ Magnesium - metabolism
/ Manganese - metabolism
/ Models, Molecular
/ Molecular biology
/ Molecular biophysics
/ multidisciplinary
/ Phage h6
/ Protein Conformation
/ Recombinant Proteins - chemistry
/ Recombinant Proteins - metabolism
/ Ribonucleic acid
/ RNA
/ RNA, Double-Stranded - metabolism
/ RNA, Viral - metabolism
/ RNA-Directed DNA Polymerase - chemistry
/ RNA-Directed DNA Polymerase - metabolism
/ Science
/ Science (multidisciplinary)
/ Structure in molecular biology
/ Templates, Genetic
/ Transcription, Genetic
/ Viruses
2001
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A mechanism for initiating RNA-dependent RNA polymerization
Journal Article
A mechanism for initiating RNA-dependent RNA polymerization
2001
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Overview
In most RNA viruses, genome replication and transcription are catalysed by a viral RNA-dependent RNA polymerase. Double-stranded RNA viruses perform these operations in a capsid (the polymerase complex), using an enzyme that can read both single- and double-stranded RNA. Structures have been solved for such viral capsids, but they do not resolve the polymerase subunits in any detail
1
,
2
. Here we show that the 2 Å resolution X-ray structure of the active polymerase subunit from the double-stranded RNA bacteriophage φ6 (refs
3
,
4
) is highly similar to that of the polymerase of hepatitis C virus, providing an evolutionary link between double-stranded RNA viruses and flaviviruses. By crystal soaking and co-crystallization, we determined a number of other structures, including complexes with oligonucleotide and/or nucleoside triphosphates (NTPs), that suggest a mechanism by which the incoming double-stranded RNA is opened up to feed the template through to the active site, while the substrates enter by another route. The template strand initially overshoots, locking into a specificity pocket, and then, in the presence of cognate NTPs, reverses to form the initiation complex; this process engages two NTPs, one of which acts with the carboxy-terminal domain of the protein to prime the reaction. Our results provide a working model for the initiation of replication and transcription.
Publisher
Nature Publishing Group UK,Nature Publishing,Nature Publishing Group
Subject
Bacteriophage phi 6 - enzymology
/ Bacteriophage phi 6 - genetics
/ Biological and medical sciences
/ Fundamental and applied biological sciences. Psychology
/ Genomics
/ Humanities and Social Sciences
/ letter
/ Phage h6
/ Recombinant Proteins - chemistry
/ Recombinant Proteins - metabolism
/ RNA
/ RNA, Double-Stranded - metabolism
/ RNA-Directed DNA Polymerase - chemistry
/ RNA-Directed DNA Polymerase - metabolism
/ Science
/ Structure in molecular biology
/ Viruses
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