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The 3D Genome Browser: a web-based browser for visualizing 3D genome organization and long-range chromatin interactions
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The 3D Genome Browser: a web-based browser for visualizing 3D genome organization and long-range chromatin interactions
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Journal Article
The 3D Genome Browser: a web-based browser for visualizing 3D genome organization and long-range chromatin interactions
2018
Overview
Here, we introduce the 3D Genome Browser,
http://3dgenome.org
, which allows users to conveniently explore both their own and over 300 publicly available chromatin interaction data of different types. We design a new binary data format for Hi-C data that reduces the file size by at least a magnitude and allows users to visualize chromatin interactions over millions of base pairs within seconds. Our browser provides multiple methods linking distal
cis
-regulatory elements with their potential target genes. Users can seamlessly integrate thousands of other omics data to gain a comprehensive view of both regulatory landscape and 3D genome structure.
Publisher
BioMed Central,Springer Nature B.V,BMC
