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Genome-wide identification and expression analysis of ARF gene family in embryonic development of Korean pine (Pinus koraiensis)
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Genome-wide identification and expression analysis of ARF gene family in embryonic development of Korean pine (Pinus koraiensis)
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Genome-wide identification and expression analysis of ARF gene family in embryonic development of Korean pine (Pinus koraiensis)
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Journal Article
Genome-wide identification and expression analysis of ARF gene family in embryonic development of Korean pine (Pinus koraiensis)
2024
Overview
Background
The Auxin Responsive Factor (
ARF
) family plays a crucial role in mediating auxin signal transduction and is vital for plant growth and development. However, the function of
ARF
genes in Korean pine (
Pinus koraiensis
), a conifer species of significant economic value, remains unclear.
Results
This study utilized the whole genome of Korean pine to conduct bioinformatics analysis, resulting in the identification of 13
ARF
genes. A phylogenetic analysis revealed that these 13
PkorARF
genes can be classified into 4 subfamilies, indicating the presence of conserved structural characteristics within each subfamily. Protein interaction prediction indicated that Pkor01G00962.1 and Pkor07G00704.1 may have a significant role in regulating plant growth and development as core components of the PkorARFs family. Additionally, the analysis of RNA-seq and RT-qPCR expression patterns suggested that
PkorARF
genes play a crucial role in the development process of Korean pine.
Conclusion
Pkor01G00962.1
and
Pkor07G00704.1
, which are core genes of the PkorARFs family, play a potentially crucial role in regulating the fertilization and developmental process of Korean pine. This study provides a valuable reference for investigating the molecular mechanism of embryonic development in Korean pine and establishes a foundation for cultivating high-quality Korean pine.
Publisher
BioMed Central,BioMed Central Ltd,Springer Nature B.V,BMC
