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GFF Utilities: GffRead and GffCompare version 2; peer review: 3 approved
by
Pertea, Geo
, Pertea, Mihaela
in
Annotations
/ Bioinformatics
/ Computational Biology
/ Gene transfer
/ Genes
/ Genome
/ Genomes
/ Genomics
/ Molecular Sequence Annotation
/ Names
/ Software
/ Software Tool
/ Transcription
2020
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GFF Utilities: GffRead and GffCompare version 2; peer review: 3 approved
by
Pertea, Geo
, Pertea, Mihaela
in
Annotations
/ Bioinformatics
/ Computational Biology
/ Gene transfer
/ Genes
/ Genome
/ Genomes
/ Genomics
/ Molecular Sequence Annotation
/ Names
/ Software
/ Software Tool
/ Transcription
2020
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Do you wish to request the book?
GFF Utilities: GffRead and GffCompare version 2; peer review: 3 approved
by
Pertea, Geo
, Pertea, Mihaela
in
Annotations
/ Bioinformatics
/ Computational Biology
/ Gene transfer
/ Genes
/ Genome
/ Genomes
/ Genomics
/ Molecular Sequence Annotation
/ Names
/ Software
/ Software Tool
/ Transcription
2020
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GFF Utilities: GffRead and GffCompare version 2; peer review: 3 approved
Journal Article
GFF Utilities: GffRead and GffCompare version 2; peer review: 3 approved
2020
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Overview
GTF (Gene Transfer Format) and GFF (General Feature Format) are popular file formats used by bioinformatics programs to represent and exchange information about various genomic features, such as gene and transcript locations and structure. GffRead and GffCompare are open source programs that provide extensive and efficient solutions to manipulate files in a GTF or GFF format. While GffRead can convert, sort, filter, transform, or cluster genomic features, GffCompare can be used to compare and merge different gene annotations.
Availability and implementation: GFF utilities are implemented in C++ for Linux and OS X and released as open source under an MIT license (
https://github.com/gpertea/gffread,
https://github.com/gpertea/gffcompare).
Publisher
Faculty of 1000 Ltd,F1000 Research Limited,F1000 Research Ltd
Subject
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