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Phylogenetic Position of Chosenia arbutifolia in the Salicaceae Inferred from Whole Chloroplast Genome / 叶绿体全基因组序列确定钻天柳在杨柳科中的系统发育位置
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Phylogenetic Position of Chosenia arbutifolia in the Salicaceae Inferred from Whole Chloroplast Genome / 叶绿体全基因组序列确定钻天柳在杨柳科中的系统发育位置
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Phylogenetic Position of Chosenia arbutifolia in the Salicaceae Inferred from Whole Chloroplast Genome / 叶绿体全基因组序列确定钻天柳在杨柳科中的系统发育位置
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Journal Article
Phylogenetic Position of Chosenia arbutifolia in the Salicaceae Inferred from Whole Chloroplast Genome / 叶绿体全基因组序列确定钻天柳在杨柳科中的系统发育位置
2019
Overview
[Objective] To resolve the controversy over the phylogenetic position of Chosenia arbutifolia in Salicaceae.[Method] The whole chloroplast genome sequences of C. arbutifolia was determined by next-generation sequencing, and the phylogenetic position of C. arbutifolia was investigated by comparing its sequences with all available complete chloroplast genome sequences from the genera Populus and Salix.[Result] The total genome was 155, 661 bp, consisting of two single-copy regions separated by a pair of inverted repeats (IRs) of 27, 455 bp. The large single-copy (LSC) and small single-copy (SSC) regions spanned 84, 536 bp and 16, 215 bp, respectively. The total GC content of the chloroplast genome was 36.68% and 113 unique genes were annotated, including 79 protein coding genes, 30 tRNA genes, and four rRNA genes. Twenty genes were duplicated in the inverted repeat regions, 14 genes contained one intron, and three genes (rps12, clpP, and ycf3) contained two introns.[Conclusion] A phylogenetic tree constructed f
Publisher
Chinese Academy of Forestry
Subject
