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7
result(s) for
"Vandenbussche, Jonathan"
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Genetic predisposition for beta cell fragility underlies type 1 and type 2 diabetes
2016
Adrian Liston and colleagues use a transgenic mouse model to demonstrate that beta cell failure is a mechanistic commonality in type 1 and type 2 diabetes. They find that the changes in the molecular pathways identified as contributing to beta cell loss are paralleled in human islets from patients with type 2 diabetes.
Type 1 (T1D) and type 2 (T2D) diabetes share pathophysiological characteristics, yet mechanistic links have remained elusive. T1D results from autoimmune destruction of pancreatic beta cells, whereas beta cell failure in T2D is delayed and progressive. Here we find a new genetic component of diabetes susceptibility in T1D non-obese diabetic (NOD) mice, identifying immune-independent beta cell fragility. Genetic variation in
Xrcc4
and
Glis3
alters the response of NOD beta cells to unfolded protein stress, enhancing the apoptotic and senescent fates. The same transcriptional relationships were observed in human islets, demonstrating the role of beta cell fragility in genetic predisposition to diabetes.
Journal Article
NBPF1, a tumor suppressor candidate in neuroblastoma, exerts growth inhibitory effects by inducing a G1 cell cycle arrest
by
Parthoens, Eef
,
Bogaert, Pieter
,
Vandepoele, Karl
in
Analysis
,
Biomedical and Life Sciences
,
Biomedicine
2015
Background
NBPF1
(Neuroblastoma Breakpoint Family, member 1) was originally identified in a neuroblastoma patient on the basis of its disruption by a chromosomal translocation t(1;17)(p36.2;q11.2). Considering this genetic defect and the frequent genomic alterations of the
NBPF1
locus in several cancer types, we hypothesized that
NBPF1
is a tumor suppressor. Decreased expression of
NBPF1
in neuroblastoma cell lines with loss of 1p36 heterozygosity and the marked decrease of anchorage-independent clonal growth of DLD1 colorectal carcinoma cells with induced
NBPF1
expression further suggest that NBPF1 functions as tumor suppressor. However, little is known about the mechanisms involved.
Methods
Expression of NBPF was analyzed in human skin and human cervix by immunohistochemistry. The effects of NBPF1 on the cell cycle were evaluated by flow cytometry. We investigated by real-time quantitative RT-PCR the expression profile of a panel of genes important in cell cycle regulation. Protein levels of
CDKN1A
-encoded p21
CIP1/WAF1
were determined by western blotting and the importance of p53 was shown by immunofluorescence and by a loss-of-function approach. LC-MS/MS analysis was used to investigate the proteome of DLD1 colon cancer cells with induced NBPF1 expression. Possible biological interactions between the differentially regulated proteins were investigated with the Ingenuity Pathway Analysis tool.
Results
We show that NBPF is expressed in the non-proliferative suprabasal layers of squamous stratified epithelia of human skin and cervix. Forced expression of NBPF1 in HEK293T cells resulted in a G1 cell cycle arrest that was accompanied by upregulation of the cyclin-dependent kinase inhibitor p21
CIP1/WAF1
in a p53-dependent manner. Additionally, forced expression of NBPF1 in two p53-mutant neuroblastoma cell lines also resulted in a G1 cell cycle arrest and
CDKN1A
upregulation. However,
CDKN1A
upregulation by NBPF1 was not observed in the DLD1 cells, which demonstrates that NBPF1 exerts cell-specific effects. In addition, proteome analysis of NBPF1-overexpressing DLD1 cells identified 32 differentially expressed proteins, of which several are implicated in carcinogenesis.
Conclusions
We demonstrated that NBPF1 exerts different tumor suppressive effects, depending on the cell line analyzed, and provide new clues into the molecular mechanism of the enigmatic NBPF proteins.
Journal Article
Olduvai domain expression downregulates mitochondrial pathways: implications for human brain evolution and neoteny
2024
Encoded by the NBPF gene family, Olduvai (formerly DUF1220) protein domains have undergone the largest human lineage-specific copy number expansion of any coding region in the genome. Olduvai copy number shows a linear relationship with several brain size-related measures and cortical neuron number among primates and with normal and disease-associated (micro- and macrocephaly) variation in brain size in human populations. While Olduvai domains have been shown to promote proliferation of neural stem cells, the mechanism underlying such effects has remained unclear. Here, we investigate the function of Olduvai by transcriptome and proteome analyses of cells overexpressing
, a gene encoding 7 Olduvai domains. Our results from both RNAseq and mass spectrometry approaches suggest a potential downregulation of mitochondria. In our proteomics study, a Gene Ontology (GO) enrichment analysis for the downregulated proteins revealed a striking overrepresentation of the biological process related to the mitochondrial electron transport chain (
value: 1.81e-11) and identified deregulation of the NADH dehydrogenase activity (
value: 2.43e-11) as the primary molecular function. We verify the reduction of apparent mitochondria via live-cell imaging experiments. Given these and previous Olduvai findings, we suggest that the Olduvai-mediated, dosage-dependent reduction in available energy via mitochondrial downregulation may have resulted in a developmental slowdown such that the neurogenic window among primates, and most extremely in humans, was expanded over a greater time interval, allowing for production of greater numbers of neurons and a larger brain. We further suggest that such a slowdown may extend to other developmental processes that also exhibit neotenic features.
Journal Article
High-throughput nano-flow proteomics using a dual-column electrospray source
2024
With current trends in proteomics, especially regarding clinical and low input (to single cell) samples, it is increasingly important to both maximize the throughput of the analysis and maintain as much sensitivity as possible. The new generation of mass spectrometers (MS) are taking a huge leap in sensitivity, allowing to analyze samples with shorter liquid chromatography (LC) methods while digging as deep in the proteome. However, the throughput can be doubled by implementing a dual column nano-LC-MS configuration. For this purpose, we used a dual-column setup with a two-outlet electrospray source, and compared it to a classic dual-column setup with a single-outlet source.Competing Interest StatementThe authors have declared no competing interest.
Peptide Mapping of Monoclonal Antibodies and Antibody-Drug Conjugates Using Micro-Pillar Array Columns Combined with Mass Spectrometry
2018
Monoclonal antibodies are becoming a core aspect of the pharmaceutical industry. Together with a huge therapeutic potential, these molecules come with a structural complexity that drives stateof- the-art chromatography and mass spectrometry (MS) to its limits. This article discusses the use of micro-pillar array columns in combination with mass spectrometry for peptide mapping of monoclonal antibodies (mAbs) and antibody-drug conjugates (ADCs). Micro-pillar array columns are produced by a lithographic etching process creating a perfectly ordered separation bed on a silicon chip. As a result of the order existing in these columns, peak dispersion is minimized and highly efficient peptide maps are generated, providing enormous structural detail. Using examples from the author's laboratory, the performance of these columns is illustrated.
Magazine Article
Lorcaserin Safety in Overweight or Obese Patients
by
Scirica, Benjamin M
,
Zipursky, Jonathan S
,
Goadsby, Peter J
in
Benzazepines
,
Body weight
,
Chlorophenylpiperazine
2019
To the Editor:
The article by Bohula et al. (Sept. 20 issue)
1
examined the use of lorcaserin, a selective agonist of the 5-hydroxytryptamine 2C serotonin receptor (5-HT2C), in overweight or obese patients. In this trial and previous trials,
2
headache was one of the most common side effects of lorcaserin and a common reason for discontinuation. Meta-chlorophenylpiperazine (mCPP), another 5-HT2C receptor agonist and a major metabolite of trazodone, has been shown to trigger headache with migrainous phenotype among susceptible persons.
3-5
The pharmacology of lorcaserin, with its side effect of headache, reinforces the role of serotonergic mechanisms, specifically the 5-HT2C receptor, in . . .
Journal Article
L-band nulling interferometry at the VLTI with Asgard/Hi-5: status and plans
by
Bigioli, Azzurra
,
Missiaen, Kwinten
,
Matter, Alexis
in
Beam combiners
,
Extrasolar planets
,
Main sequence stars
2022
Hi-5 is the L'-band (3.5-4.0 \\(\\mu\\)m) high-contrast imager of Asgard, an instrument suite in preparation for the visitor focus of the VLTI. The system is optimized for high-contrast and high-sensitivity imaging within the diffraction limit of a single UT/AT telescope. It is designed as a double-Bracewell nulling instrument producing spectrally-dispersed (R=20, 400, or 2000) complementary nulling outputs and simultaneous photometric outputs for self-calibration purposes. In this paper, we present an update of the project with a particular focus on the overall architecture, opto-mechanical design of the warm and cold optics, injection system, and development of the photonic beam combiner. The key science projects are to survey (i) nearby young planetary systems near the snow line, where most giant planets are expected to be formed, and (ii) nearby main sequence stars near the habitable zone where exozodiacal dust that may hinder the detection of Earth-like planets. We present an update of the expected instrumental performance based on full end-to-end simulations using the new GRAVITY+ specifications of the VLTI and the latest planet formation models.