Journal Article

Benchmarking of eight recurrent neural network variants for breath phase and adventitious sound detection on a self-developed open-access lung sound database—HF_Lung_V1

Huang, Shang-Ran, Hsu, Fu-Shun, Chen, Chung-Wei, Lai, Feipei, Lai, Yen-Chun, Lin, Nian-Jhen, Cheng, Yuan-Ren, Chen, Li-Chin, Chen, Yi-Tsun, Hsu, Bi-Fang, Wu, Yi-Lin, Huang, Chien-Wen, Tsai, Wan-Ling, Tseng, Ching-Ting, Huang, Chao-Jung, Hsiao, Jack, Chen, Chun-Chieh, Tseng, Tzu-Ling

2021

Overview

A reliable, remote, and continuous real-time respiratory sound monitor with automated respiratory sound analysis ability is urgently required in many clinical scenarios—such as in monitoring disease progression of coronavirus disease 2019—to replace conventional auscultation with a handheld stethoscope. However, a robust computerized respiratory sound analysis algorithm for breath phase detection and adventitious sound detection at the recording level has not yet been validated in practical applications. In this study, we developed a lung sound database (HF_Lung_V1) comprising 9,765 audio files of lung sounds (duration of 15 s each), 34,095 inhalation labels, 18,349 exhalation labels, 13,883 continuous adventitious sound (CAS) labels (comprising 8,457 wheeze labels, 686 stridor labels, and 4,740 rhonchus labels), and 15,606 discontinuous adventitious sound labels (all crackles). We conducted benchmark tests using long short-term memory (LSTM), gated recurrent unit (GRU), bidirectional LSTM (BiLSTM), bidirectional GRU (BiGRU), convolutional neural network (CNN)-LSTM, CNN-GRU, CNN-BiLSTM, and CNN-BiGRU models for breath phase detection and adventitious sound detection. We also conducted a performance comparison between the LSTM-based and GRU-based models, between unidirectional and bidirectional models, and between models with and without a CNN. The results revealed that these models exhibited adequate performance in lung sound analysis. The GRU-based models outperformed, in terms of F1 scores and areas under the receiver operating characteristic curves, the LSTM-based models in most of the defined tasks. Furthermore, all bidirectional models outperformed their unidirectional counterparts. Finally, the addition of a CNN improved the accuracy of lung sound analysis, especially in the CAS detection tasks.

• Publisher: Public Library of Science,Public Library of Science (PLoS)
• Subject: Acoustics / Adult / Aged / Aged, 80 and over / Algorithms / Analysis / Artificial intelligence / Artificial neural networks / Audio data / Auscultation / Benchmarking / Bioinformatics / Coronaviruses / COVID-19 / COVID-19 - diagnosis / COVID-19 - physiopathology / Critical care / Database administration / Databases, Factual / Deep learning / Disease Progression / Disease transmission / Exhalation / Female / Hospitals / Humans / Inhalation / Labels / Life sciences / Long short-term memory / Lung - physiopathology / Lungs / Machine learning / Male / Medical instruments / Medical research / Methods / Middle Aged / Neural networks / Neural Networks, Computer / Open access / Recurrent neural networks / Remote monitoring / Respiration / Respiratory Sounds - physiopathology / Short term memory / Sound / Supervision