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Structure and topography of the synaptic V-ATPase–synaptophysin complex
Structure and topography of the synaptic V-ATPase–synaptophysin complex
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Structure and topography of the synaptic V-ATPase–synaptophysin complex
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Structure and topography of the synaptic V-ATPase–synaptophysin complex
Structure and topography of the synaptic V-ATPase–synaptophysin complex

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Structure and topography of the synaptic V-ATPase–synaptophysin complex
Structure and topography of the synaptic V-ATPase–synaptophysin complex
Journal Article

Structure and topography of the synaptic V-ATPase–synaptophysin complex

2024
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Overview
Synaptic vesicles are organelles with a precisely defined protein and lipid composition 1 , 2 , yet the molecular mechanisms for the biogenesis of synaptic vesicles are mainly unknown. Here we discovered a well-defined interface between the synaptic vesicle V-ATPase and synaptophysin by in situ cryo-electron tomography and single-particle cryo-electron microscopy of functional synaptic vesicles isolated from mouse brains 3 . The synaptic vesicle V-ATPase is an ATP-dependent proton pump that establishes the proton gradient across the synaptic vesicle, which in turn drives the uptake of neurotransmitters 4 , 5 . Synaptophysin 6 and its paralogues synaptoporin 7 and synaptogyrin 8 belong to a family of abundant synaptic vesicle proteins whose function is still unclear. We performed structural and functional studies of synaptophysin-knockout mice, confirming the identity of synaptophysin as an interaction partner with the V-ATPase. Although there is little change in the conformation of the V-ATPase upon interaction with synaptophysin, the presence of synaptophysin in synaptic vesicles profoundly affects the copy number of V-ATPases. This effect on the topography of synaptic vesicles suggests that synaptophysin assists in their biogenesis. In support of this model, we observed that synaptophysin-knockout mice exhibit severe seizure susceptibility, suggesting an imbalance of neurotransmitter release as a physiological consequence of the absence of synaptophysin. Using cryo-electron tomography and single-particle cryo-electron microscopy of functional synaptic vesicles, a V-ATPase–synaptophysin interface was found to regulate synaptic vesicle biogenesis and alter seizure susceptibility.