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Single-cell analysis resolves the cell state transition and signaling dynamics associated with melanoma drug-induced resistance
by
Xue, Min
, Moreno, Blanca Homet
, Wei, Wei
, Kim, Jungwoo
, Ribas, Antoni
, Heath, James R.
, Garcia-Diaz, Angel
, Su, Yapeng
, Lee, Jihoon W.
, Koya, Richard C.
, Comin-Anduix, Begonya
, Tsoi, Jennifer
, Robert, Lidia
, Ng, Rachel H.
, Graeber, Thomas G.
in
Adaptation, Physiological
/ Antineoplastic Agents - pharmacology
/ Biological Sciences
/ Biophysics and Computational Biology
/ Biotechnology
/ Cell activation
/ Cell culture
/ Cell Line, Tumor
/ Cell lines
/ Drug resistance
/ Drug Resistance, Neoplasm
/ Engineering
/ Gene Expression Profiling
/ Genomes
/ Genotype & phenotype
/ Humans
/ Kinetics
/ MAP Kinase Signaling System - drug effects
/ Markov Chains
/ Melanoma
/ Melanoma - drug therapy
/ Melanoma - genetics
/ Melanoma - metabolism
/ Melanoma - pathology
/ Mutation
/ NF-kappa B - metabolism
/ Phenotype
/ Phenotyping
/ Physical Sciences
/ Plastics
/ Proteome
/ Proteomics
/ Proteomics - methods
/ Proto-Oncogene Proteins B-raf - genetics
/ Signal Transduction
/ Signaling
/ Single-Cell Analysis
/ Transportation networks
2017
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Single-cell analysis resolves the cell state transition and signaling dynamics associated with melanoma drug-induced resistance
by
Xue, Min
, Moreno, Blanca Homet
, Wei, Wei
, Kim, Jungwoo
, Ribas, Antoni
, Heath, James R.
, Garcia-Diaz, Angel
, Su, Yapeng
, Lee, Jihoon W.
, Koya, Richard C.
, Comin-Anduix, Begonya
, Tsoi, Jennifer
, Robert, Lidia
, Ng, Rachel H.
, Graeber, Thomas G.
in
Adaptation, Physiological
/ Antineoplastic Agents - pharmacology
/ Biological Sciences
/ Biophysics and Computational Biology
/ Biotechnology
/ Cell activation
/ Cell culture
/ Cell Line, Tumor
/ Cell lines
/ Drug resistance
/ Drug Resistance, Neoplasm
/ Engineering
/ Gene Expression Profiling
/ Genomes
/ Genotype & phenotype
/ Humans
/ Kinetics
/ MAP Kinase Signaling System - drug effects
/ Markov Chains
/ Melanoma
/ Melanoma - drug therapy
/ Melanoma - genetics
/ Melanoma - metabolism
/ Melanoma - pathology
/ Mutation
/ NF-kappa B - metabolism
/ Phenotype
/ Phenotyping
/ Physical Sciences
/ Plastics
/ Proteome
/ Proteomics
/ Proteomics - methods
/ Proto-Oncogene Proteins B-raf - genetics
/ Signal Transduction
/ Signaling
/ Single-Cell Analysis
/ Transportation networks
2017
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Single-cell analysis resolves the cell state transition and signaling dynamics associated with melanoma drug-induced resistance
by
Xue, Min
, Moreno, Blanca Homet
, Wei, Wei
, Kim, Jungwoo
, Ribas, Antoni
, Heath, James R.
, Garcia-Diaz, Angel
, Su, Yapeng
, Lee, Jihoon W.
, Koya, Richard C.
, Comin-Anduix, Begonya
, Tsoi, Jennifer
, Robert, Lidia
, Ng, Rachel H.
, Graeber, Thomas G.
in
Adaptation, Physiological
/ Antineoplastic Agents - pharmacology
/ Biological Sciences
/ Biophysics and Computational Biology
/ Biotechnology
/ Cell activation
/ Cell culture
/ Cell Line, Tumor
/ Cell lines
/ Drug resistance
/ Drug Resistance, Neoplasm
/ Engineering
/ Gene Expression Profiling
/ Genomes
/ Genotype & phenotype
/ Humans
/ Kinetics
/ MAP Kinase Signaling System - drug effects
/ Markov Chains
/ Melanoma
/ Melanoma - drug therapy
/ Melanoma - genetics
/ Melanoma - metabolism
/ Melanoma - pathology
/ Mutation
/ NF-kappa B - metabolism
/ Phenotype
/ Phenotyping
/ Physical Sciences
/ Plastics
/ Proteome
/ Proteomics
/ Proteomics - methods
/ Proto-Oncogene Proteins B-raf - genetics
/ Signal Transduction
/ Signaling
/ Single-Cell Analysis
/ Transportation networks
2017
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Single-cell analysis resolves the cell state transition and signaling dynamics associated with melanoma drug-induced resistance
Journal Article
Single-cell analysis resolves the cell state transition and signaling dynamics associated with melanoma drug-induced resistance
2017
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Overview
Continuous BRAF inhibition of BRAF mutant melanomas triggers a series of cell state changes that lead to therapy resistance and escape from immune control before establishing acquired resistance genetically. We used genome-wide transcriptomics and single-cell phenotyping to explore the response kinetics to BRAF inhibition for a panel of patient-derived BRAFV600
-mutant melanoma cell lines. A subset of plastic cell lines, which followed a trajectory covering multiple known cell state transitions, provided models for more detailed biophysical investigations. Markov modeling revealed that the cell state transitions were reversible and mediated by both Lamarckian induction and nongenetic Darwinian selection of drug-tolerant states. Single-cell functional proteomics revealed activation of certain signaling networks shortly after BRAF inhibition, and before the appearance of drug-resistant phenotypes. Drug targeting those networks, in combination with BRAF inhibition, halted the adaptive transition and led to prolonged growth inhibition in multiple patient-derived cell lines.
Publisher
National Academy of Sciences
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