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Noninvasive, epigenetic age estimation in an elasmobranch, the cownose ray (Rhinoptera bonasus)
by
Portnoy, David S.
, George, Robert
, LePage, Véronique
, Lyons, Kady
, Ed Latson, F.
, Nick Weber, D.
, Wyffels, Jennifer T.
, Buckner, Chris
in
631/158/1745
/ 631/208/176/1988
/ 704/829/826
/ Age
/ Age determination
/ Ageing
/ Aging - genetics
/ Animals
/ Aquariums
/ CpG Islands
/ Deoxyribonucleic acid
/ DNA
/ DNA Methylation
/ DNA sequencing
/ Epigenesis, Genetic
/ Epigenetic clock
/ Epigenetics
/ Humanities and Social Sciences
/ Life history
/ Multi-tissue
/ multidisciplinary
/ Rays
/ Rhinoptera bonasus
/ Science
/ Science (multidisciplinary)
/ Sequence Analysis, DNA - methods
/ Sharks
/ Skates, Fish - genetics
/ Vertebrae
2024
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Noninvasive, epigenetic age estimation in an elasmobranch, the cownose ray (Rhinoptera bonasus)
by
Portnoy, David S.
, George, Robert
, LePage, Véronique
, Lyons, Kady
, Ed Latson, F.
, Nick Weber, D.
, Wyffels, Jennifer T.
, Buckner, Chris
in
631/158/1745
/ 631/208/176/1988
/ 704/829/826
/ Age
/ Age determination
/ Ageing
/ Aging - genetics
/ Animals
/ Aquariums
/ CpG Islands
/ Deoxyribonucleic acid
/ DNA
/ DNA Methylation
/ DNA sequencing
/ Epigenesis, Genetic
/ Epigenetic clock
/ Epigenetics
/ Humanities and Social Sciences
/ Life history
/ Multi-tissue
/ multidisciplinary
/ Rays
/ Rhinoptera bonasus
/ Science
/ Science (multidisciplinary)
/ Sequence Analysis, DNA - methods
/ Sharks
/ Skates, Fish - genetics
/ Vertebrae
2024
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Noninvasive, epigenetic age estimation in an elasmobranch, the cownose ray (Rhinoptera bonasus)
by
Portnoy, David S.
, George, Robert
, LePage, Véronique
, Lyons, Kady
, Ed Latson, F.
, Nick Weber, D.
, Wyffels, Jennifer T.
, Buckner, Chris
in
631/158/1745
/ 631/208/176/1988
/ 704/829/826
/ Age
/ Age determination
/ Ageing
/ Aging - genetics
/ Animals
/ Aquariums
/ CpG Islands
/ Deoxyribonucleic acid
/ DNA
/ DNA Methylation
/ DNA sequencing
/ Epigenesis, Genetic
/ Epigenetic clock
/ Epigenetics
/ Humanities and Social Sciences
/ Life history
/ Multi-tissue
/ multidisciplinary
/ Rays
/ Rhinoptera bonasus
/ Science
/ Science (multidisciplinary)
/ Sequence Analysis, DNA - methods
/ Sharks
/ Skates, Fish - genetics
/ Vertebrae
2024
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Noninvasive, epigenetic age estimation in an elasmobranch, the cownose ray (Rhinoptera bonasus)
Journal Article
Noninvasive, epigenetic age estimation in an elasmobranch, the cownose ray (Rhinoptera bonasus)
2024
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Overview
Age data are essential for estimating life history parameters and are thus critical for population assessment, management, and conservation. Traditional vertebrae-based age estimation in elasmobranchs can be costly, time intensive, of low accuracy, and is by necessity lethal. Herein, epigenetic clocks were developed for an elasmobranch, the cownose ray (
Rhinoptera bonasus
), using aquarium-born individuals (
n
= 42) with known dates of birth (age range: 7−7,878 days or 0−21 years) and two tissue types (fin clips and whole blood) that can be sampled in a relatively non-invasive manner. Enzymatically-converted restriction site-associated DNA sequencing (ECrad-seq) was used to identify CpG sites that exhibited age-correlated DNA methylation. The epigenetic clocks developed were highly accurate (mean absolute error, MAE, < 0.75 years) and precise (
R
2
> 0.98). Age-associated CpG sites were identified across tissues, and a multi-tissue clock was also highly accurate (MAE < 1 year) and precise (
R
2
= 0.97). Using the developed fin clip clock, three wild-caught individuals of unknown age but managed in aquariums for > 22 years were predicted to be 22.10−23.49 years old. Overall, the results have important implications for future epigenetic clock development and noninvasive age estimation in elasmobranchs.
Publisher
Nature Publishing Group UK,Nature Publishing Group,Nature Portfolio
Subject
/ Age
/ Ageing
/ Animals
/ DNA
/ Humanities and Social Sciences
/ Rays
/ Science
/ Sequence Analysis, DNA - methods
/ Sharks
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