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Origin and evolution of the triploid cultivated banana genome

by Jiang, Mengwei , Wang, Jihua , Li, Hua , Wu, Qiong , Wang, Xianjun , Wen, Xiaohui , Wang, Zonghua , Van de Peer, Yves , Zhang, Chen , Lin, Zhenguo , Cheng, Zhihao , Zhu, Wenjun , Chen, Xuequn , Xu, Shiyao , Zhang, Liangsheng , Hu, Jin , Yun, Yingzi , Li, Xiuxiu , Aury, Jean-Marc , Xu, Yanbing , Zhou, Xiaofan , Chang, Xiaojun , Lü, Peitao , Yu, Sheng

in 631/208/212 / 631/449/2491/1559 / Agriculture / Animal Genetics and Genomics / Bananas / Bans / Biomedical and Life Sciences / Biomedicine / Cancer Research / Chromosomes / Cloning / Comparative analysis / Cultivars / Cultivation / Diploids / Domestication / Fruit cultivation / Fruits / Fusarium - genetics / Fusarium oxysporum / Gene Function / Genes / Genomes / Human Genetics / Kinases / Life Sciences / Musa - genetics / Musa acuminata / Musa banksii / Pathogens / Plant Breeding / Plant Diseases - genetics / Proteins / Ripening / Subgroups / Transcription Factors - genetics / Triploidy / Vegetal Biology

2024

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2024

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2024

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Journal Article

Origin and evolution of the triploid cultivated banana genome

Jiang, Mengwei,

Wang, Jihua,

Li, Hua,

Wu, Qiong,

Wang, Xianjun,

Wen, Xiaohui,

Wang, Zonghua,

Van de Peer, Yves,

Zhang, Chen,

Lin, Zhenguo,

Cheng, Zhihao,

Zhu, Wenjun,

Chen, Xuequn,

Xu, Shiyao,

Zhang, Liangsheng,

Hu, Jin,

Yun, Yingzi,

Li, Xiuxiu,

Aury, Jean-Marc,

Xu, Yanbing,

Zhou, Xiaofan,

Chang, Xiaojun,

Lü, Peitao,

Yu, Sheng

2024

Overview

Most fresh bananas belong to the Cavendish and Gros Michel subgroups. Here, we report chromosome-scale genome assemblies of Cavendish (1.48 Gb) and Gros Michel (1.33 Gb), defining three subgenomes, Ban, Dh and Ze, with Musa acuminata ssp. banksii, malaccensis and zebrina as their major ancestral contributors, respectively. The insertion of repeat sequences in the Fusarium oxysporum f. sp. cubense (Foc) tropical race 4 RGA2 (resistance gene analog 2) promoter was identified in most diploid and triploid bananas. We found that the receptor-like protein (RLP) locus, including Foc race 1-resistant genes, is absent in the Gros Michel Ze subgenome. We identified two NAP (NAC-like, activated by apetala3/pistillata) transcription factor homologs specifically and highly expressed in fruit that directly bind to the promoters of many fruit ripening genes and may be key regulators of fruit ripening. Our genome data should facilitate the breeding and super-domestication of bananas.

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Publisher

Nature Publishing Group US,Nature Publishing Group

Subject

631/208/212

/ 631/449/2491/1559

/ Agriculture

/ Animal Genetics and Genomics

/ Bananas

/ Bans

/ Biomedical and Life Sciences