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Cross-validation pitfalls when selecting and assessing regression and classification models
by
Leahy, David E
, Thomas, Simon
, Buturovic, Ljubomir J
, Krstajic, Damjan
in
6th Joint Sheffield Conference on Chemoinformatics
/ Algorithms
/ Bias
/ Chemistry
/ Chemistry and Materials Science
/ Classification
/ Cloud computing
/ Computational Biology/Bioinformatics
/ Computer Applications in Chemistry
/ Costs
/ Documentation and Information in Chemistry
/ Methodology
/ Methods
/ Studies
/ Theoretical and Computational Chemistry
2014
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Cross-validation pitfalls when selecting and assessing regression and classification models
by
Leahy, David E
, Thomas, Simon
, Buturovic, Ljubomir J
, Krstajic, Damjan
in
6th Joint Sheffield Conference on Chemoinformatics
/ Algorithms
/ Bias
/ Chemistry
/ Chemistry and Materials Science
/ Classification
/ Cloud computing
/ Computational Biology/Bioinformatics
/ Computer Applications in Chemistry
/ Costs
/ Documentation and Information in Chemistry
/ Methodology
/ Methods
/ Studies
/ Theoretical and Computational Chemistry
2014
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While trying to remove the title from your shelf something went wrong :( Kindly try again later!
Do you wish to request the book?
Cross-validation pitfalls when selecting and assessing regression and classification models
by
Leahy, David E
, Thomas, Simon
, Buturovic, Ljubomir J
, Krstajic, Damjan
in
6th Joint Sheffield Conference on Chemoinformatics
/ Algorithms
/ Bias
/ Chemistry
/ Chemistry and Materials Science
/ Classification
/ Cloud computing
/ Computational Biology/Bioinformatics
/ Computer Applications in Chemistry
/ Costs
/ Documentation and Information in Chemistry
/ Methodology
/ Methods
/ Studies
/ Theoretical and Computational Chemistry
2014
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Cross-validation pitfalls when selecting and assessing regression and classification models
Journal Article
Cross-validation pitfalls when selecting and assessing regression and classification models
2014
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Overview
Background
We address the problem of selecting and assessing classification and regression models using cross-validation. Current state-of-the-art methods can yield models with high variance, rendering them unsuitable for a number of practical applications including QSAR. In this paper we describe and evaluate best practices which improve reliability and increase confidence in selected models. A key operational component of the proposed methods is cloud computing which enables routine use of previously infeasible approaches.
Methods
We describe in detail an algorithm for repeated grid-search V-fold cross-validation for parameter tuning in classification and regression, and we define a repeated nested cross-validation algorithm for model assessment. As regards variable selection and parameter tuning we define two algorithms (repeated grid-search cross-validation and double cross-validation), and provide arguments for using the repeated grid-search in the general case.
Results
We show results of our algorithms on seven QSAR datasets. The variation of the prediction performance, which is the result of choosing different splits of the dataset in V-fold cross-validation, needs to be taken into account when selecting and assessing classification and regression models.
Conclusions
We demonstrate the importance of repeating cross-validation when selecting an optimal model, as well as the importance of repeating nested cross-validation when assessing a prediction error.
Publisher
Springer International Publishing,Springer Nature B.V
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