Journal Article

Efficacy of Phytochemicals Derived from Avicennia officinalis for the Management of COVID-19: A Combined In Silico and Biochemical Study

Mahmud, Shafi, Saleh, Md. Abu, Cacciola, Nunzio Antonio, Afroze, Mirola, Gupt, Swagota Briti Ray, Khan, Mala, Emran, Talha Bin, Islam, Shirmin, Paul, Gobindo Kumar, Biswas, Suvro, Uddin, Md. Salah, Capasso, Raffaele, Zaman, Shahriar, Razu, Mamudul Hasan, Simal-Gandara, Jesus

2021

Overview

The recent coronavirus disease 2019 (COVID-19) pandemic is a global threat for healthcare management and the economic system, and effective treatments against the pathogenic severe acute respiratory syndrome coronavirus 2 (SARS-CoV-2) virus responsible for this disease have not yet progressed beyond the developmental phases. As drug refinement and vaccine progression require enormously broad investments of time, alternative strategies are urgently needed. In this study, we examined phytochemicals extracted from Avicennia officinalis and evaluated their potential effects against the main protease of SARS-CoV-2. The antioxidant activities of A. officinalis leaf and fruit extracts at 150 µg/mL were 95.97% and 92.48%, respectively. Furthermore, both extracts displayed low cytotoxicity levels against Artemia salina. The gas chromatography–mass spectroscopy analysis confirmed the identifies of 75 phytochemicals from both extracts, and four potent compounds, triacontane, hexacosane, methyl linoleate, and methyl palminoleate, had binding free energy values of −6.75, −6.7, −6.3, and −6.3 Kcal/mol, respectively, in complexes with the SARS-CoV-2 main protease. The active residues Cys145, Met165, Glu166, Gln189, and Arg188 in the main protease formed non-bonded interactions with the screened compounds. The root-mean-square difference (RMSD), root-mean-square fluctuations (RMSF), radius of gyration (Rg), solvent-accessible surface area (SASA), and hydrogen bond data from a molecular dynamics simulation study confirmed the docked complexes′ binding rigidity in the atomistic simulated environment. However, this study′s findings require in vitro and in vivo validation to ensure the possible inhibitory effects and pharmacological efficacy of the identified compounds.

• Publisher: MDPI AG,MDPI
• Subject: Acids / antioxidant / Antioxidants / Antioxidants - chemistry / Antioxidants - metabolism / Antioxidants - therapeutic use / Avicennia - chemistry / Avicennia - metabolism / Avicennia officinalis / Binding Sites / Chemical compounds / Coronaviruses / COVID-19 / COVID-19 - pathology / COVID-19 - virology / COVID-19 Drug Treatment / Cytotoxicity / Enzymes / Fruit - chemistry / Fruit - metabolism / GC-MS / Humans / Hydrogen bonds / Ligands / Listeria / main protease / Middle East respiratory syndrome / Molecular Docking Simulation / Molecular Dynamics Simulation / Phenylethyl Alcohol - chemistry / Phenylethyl Alcohol - metabolism / Phenylethyl Alcohol - therapeutic use / Phenylpropionates - chemistry / Phenylpropionates - metabolism / Phenylpropionates - therapeutic use / Phytochemicals / Phytochemicals - chemistry / Phytochemicals - metabolism / Phytochemicals - therapeutic use / Plant Leaves - chemistry / Plant Leaves - metabolism / Proteins / Respiratory diseases / SARS-CoV-2 / SARS-CoV-2 - isolation & purification / SARS-CoV-2 - metabolism / Severe acute respiratory syndrome coronavirus 2 / Simulation / Viral Matrix Proteins - chemistry / Viral Matrix Proteins - metabolism / Viruses