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Genomic and metabonomic insights into the lignin-degrading potential of a novel halophilic bacterial strain Salinicoccus sp. HZC-1
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Genomic and metabonomic insights into the lignin-degrading potential of a novel halophilic bacterial strain Salinicoccus sp. HZC-1
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Genomic and metabonomic insights into the lignin-degrading potential of a novel halophilic bacterial strain Salinicoccus sp. HZC-1
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Journal Article
Genomic and metabonomic insights into the lignin-degrading potential of a novel halophilic bacterial strain Salinicoccus sp. HZC-1
2025
Overview
Lignin-derived aromatic compounds have significant potential for multiple industrial applications, and elucidating the processes for bacterial lignin degradation processes can facilitate the utilization of plant biomass. A lignin-degrading bacterial strain, designated HZC-1, was newly isolated from saline-alkali soil and exhibited robust growth in 1–18% (w/v) NaCl and across a pH range of 5.0–11.0. The isolate showed the highest 16S rRNA gene sequence similarity (≤ 97.7%) to known
Salinicoccus
species. Furthermore, average nucleotide identity (≤ 82.34) and digital DNA-DNA hybridization (≤ 52.9%) analyses supported its classification as a potentially novel species within the genus
Salinicoccus
. Genomic annotation indicated that strain HZC-1 adapted to saline-alkali environments via multiple mechanisms such as Na
+
/H
+
antiporter and glycine betaine transport systems. By combining genomic and untargeted metabolomic data, it can be inferred that this strain was capable of metabolizing lignin derivatives through non-classical pathways involving enzymes such as β-glucosidase, aromatic cyclohydroxyl dioxygenase and those associated with naphthalene degradation. These findings suggest the potential lignin-degrading capacity of
Salinicoccus
sp. HZC-1 under saline-alkali conditions, presenting a potentially novel bacterial taxon for waste lignin valorization and bioremediation of aromatic pollutants.
Publisher
BioMed Central,BioMed Central Ltd,Springer Nature B.V,BMC
Subject
/ Animal Genetics and Genomics
/ Bacteria
/ Biodegradation, Environmental
/ Biomedical and Life Sciences
/ DNA
/ Enzymes
/ Fungi
/ Genes
/ Genomes
/ Genomics
/ Glycine
/ Lignin
/ Methods
/ Microbial Genetics and Genomics
/ RNA
/ RNA, Ribosomal, 16S - genetics
/ rRNA 16S
/ Salinity
/ Salt
/ Staphylococcaceae - classification
/ Staphylococcaceae - genetics
/ Staphylococcaceae - isolation & purification
