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Dissecting esophageal squamous-cell carcinoma ecosystem by single-cell transcriptomic analysis

by Zhong, Ce , Cui, Qionghua , Wang, Yuqian , Guo, Wenjia , Liu, Yachen , Yao, Jiacheng , Wang, Jianbin , Xi, Yiyi , Wu, Chen , Peng, Linna , Chen, Liping , Wang, Chengcheng , Zhang, Xiannian , Fan, Wenyi , Pu, Yang , Shao, Mingming , Lin, Dongxin , Sun, Yanxia , Yang, Xinyu , Luo, Yingying , Chen, Yamei , Tan, Wen , Zhang, Shaosen , Zhao, Xuan , Niu, Xiangjie

in 38/39 / 45/23 / 49/91 / 631/67/1504/1477 / 631/67/2329 / Cancer / Epithelial cells / Epithelium / Esophageal cancer / Esophageal carcinoma / Esophagus / Humanities and Social Sciences / Immune system / Markers / Medical prognosis / Microenvironments / Mucosal immunity / multidisciplinary / Mutation / Science / Science (multidisciplinary) / Squamous cell carcinoma / Survival / T cell receptors / Transcriptomes / Tumor microenvironment / Tumors

2021

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2021

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2021

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Journal Article

Dissecting esophageal squamous-cell carcinoma ecosystem by single-cell transcriptomic analysis

Zhong, Ce,

Cui, Qionghua,

Wang, Yuqian,

Guo, Wenjia,

Liu, Yachen,

Yao, Jiacheng,

Wang, Jianbin,

Xi, Yiyi,

Wu, Chen,

Peng, Linna,

Chen, Liping,

Wang, Chengcheng,

Zhang, Xiannian,

Fan, Wenyi,

Pu, Yang,

Shao, Mingming,

Lin, Dongxin,

Sun, Yanxia,

Yang, Xinyu,

Luo, Yingying,

Chen, Yamei,

Tan, Wen,

Zhang, Shaosen,

Zhao, Xuan,

Niu, Xiangjie

2021

Overview

Esophageal squamous-cell carcinoma (ESCC), one of the most prevalent and lethal malignant disease, has a complex but unknown tumor ecosystem. Here, we investigate the composition of ESCC tumors based on 208,659 single-cell transcriptomes derived from 60 individuals. We identify 8 common expression programs from malignant epithelial cells and discover 42 cell types, including 26 immune cell and 16 nonimmune stromal cell subtypes in the tumor microenvironment (TME), and analyse the interactions between cancer cells and other cells and the interactions among different cell types in the TME. Moreover, we link the cancer cell transcriptomes to the somatic mutations and identify several markers significantly associated with patients’ survival, which may be relevant to precision care of ESCC patients. These results reveal the immunosuppressive status in the ESCC TME and further our understanding of ESCC. Esophageal squamous-cell carcinomas (ESCC) have poor prognosis, and detailed molecular profiles are necessary to identify prognostic markers. Here the authors analyse 60 ESCC patient samples using scRNA-seq, TCR-seq and genomics; they find mucosal immunity markers associated with survival and immunosuppressive microenvironments.

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Publisher

Nature Publishing Group UK,Nature Publishing Group,Nature Portfolio

Subject

38/39

/ 45/23

/ 49/91

/ 631/67/1504/1477

/ 631/67/2329

/ Cancer

/ Epithelial cells