Journal Article

Genetic heterogeneity of diffuse large B-cell lymphoma

Mann, Karen P., Chadburn, Amy, Walsh, Katherine, Choi, William, Richards, Kristy L., Naresh, Kikkeri, Grubor, Vladimir, Srivastava, Gopesh, Gordon, Leo I., Dunphy, Cherie, Lugar, Patricia L, Ni, Ting, Levy, Shawn, Bernal-Mizrachi, Leon, Jima, Dereje, Liu, Qingquan, Dave, Sandeep S., Love, Cassandra L., Zhang, Jenny, Flowers, Christopher, Czader, Magdalena, Fan, Alice, Evens, Andrew, Luftig, Micah A., Lagoo, Anand S., Au, Wing Yan, Dunson, David, Rizzieri, David A., Byrd, John C., Johnson, Amy J., Smith, Lisa L., Hsi, Eric D., Banerjee, Anjishnu, Mieczkowski, Piotr A., Gill, Javed I., Zhu, Jun

2013

Overview

Diffuse large B-cell lymphoma (DLBCL) is the most common form of lymphoma in adults. The disease exhibits a striking heterogeneity in gene expression profiles and clinical outcomes, but its genetic causes remain to be fully defined. Through whole genome and exome sequencing, we characterized the genetic diversity of DLBCL. In all, we sequenced 73 DLBCL primary tumors (34 with matched normal DNA). Separately, we sequenced the exomes of 21 DLBCL cell lines. We identified 322 DLBCL cancer genes that were recurrently mutated in primary DLBCLs. We identified recurrent mutations implicating a number of known and not previously identified genes and pathways in DLBCL including those related to chromatin modification (ARID1A and MEF2B), NF-κB (CARD11 and TNFAIP3), PI3 kinase (PIK3CD , PIK3R1 , and MTOR), B-cell lineage (IRF8 , POU2F2 , and GNA13), and WNT signaling (WIF1). We also experimentally validated a mutation in PIK3CD , a gene not previously implicated in lymphomas. The patterns of mutation demonstrated a classic long tail distribution with substantial variation of mutated genes from patient to patient and also between published studies. Thus, our study reveals the tremendous genetic heterogeneity that underlies lymphomas and highlights the need for personalized medicine approaches to treating these patients.

• Publisher: National Academy of Sciences,National Acad Sciences
• Subject: Adult / adults / B-lymphocytes / Base Sequence / Biological Sciences / Cell Line, Tumor / Cell lines / Chromatin / Class I Phosphatidylinositol 3-Kinases / DNA / DNA Mutational Analysis / DNA, Neoplasm - genetics / Exome / Gene Expression / Genes / Genetic diversity / Genetic Heterogeneity / Genetic mutation / Genetic Variation / Genomes / Heterogeneity / Humans / Lymphoma / Lymphoma, Large B-Cell, Diffuse - drug therapy / Lymphoma, Large B-Cell, Diffuse - genetics / Medical genetics / medicine / Models, Molecular / Molecular Sequence Data / Molecular Targeted Therapy / Mutation / Oncogenes / patients / Phosphatidylinositol 3-Kinases - chemistry / Phosphatidylinositol 3-Kinases - genetics / Protein Conformation / Proteins / Proto-Oncogene Proteins c-kit - genetics / Receptor, Platelet-Derived Growth Factor alpha - genetics / sequence analysis / Sequence Homology, Nucleic Acid / Sequencing / Signal Transduction - genetics / transcription factor NF-kappa B