Journal Article

Proteome analysis of urinary biomarkers in a cigarette smoke-induced COPD rat model

Han, Wei, Huang, He, Dai, Yuting, Gao, Youhe, Qin, Weiwei

2022

Overview

Background Chronic obstructive pulmonary disease (COPD) is a chronic inflammatory airway disease caused by inhalation of cigarette smoke (CS) and other harmful gases and particles. Methods This study aimed to explore potential urinary biomarkers for CS-induced COPD based on LC–MS/MS analysis. Results A total of 340 urinary proteins were identified, of which 79 were significantly changed (30, 31, and 37 at week 2, 4 and 8, respectively). GO annotation of the differential urinary proteins revealed that acute-phase response, response to organic cyclic compounds, complement activation classical pathway, and response to lead ion were significantly enriched at week 2 and 4. Another four processes were only enriched at week 8, namely response to oxidative stress, positive regulation of cell proliferation, thyroid hormone generation, and positive regulation of apoptotic process. The PPI network indicated that these differential proteins were biologically connected in CS-exposed rats. Of the 79 differential proteins in CS-exposed rats, 56 had human orthologs. Seven proteins that had changed at week 2 and 4 when there were no changes of pulmonary function and pathological morphology were verified as potential biomarkers for early screening of CS-induced COPD by proteomic analysis. Another six proteins that changed at week 8 when obvious airflow obstruction was detected were verified as potential biomarkers for prognostic assessment of CS-induced COPD. Conclusions These results reveal that the urinary proteome could sensitively reflect pathological changes in CS-exposed rats, and provide valuable clues for exploring COPD biomarkers.

• Publisher: BioMed Central,BioMed Central Ltd,Nature Publishing Group,BMC
• Subject: Acids / Air flow / Allergic diseases / Analysis / Animals / Annotations / Apoptosis / Biological markers / Biomarker / Biomarkers / Biomarkers - metabolism / Cell proliferation / Chromatography, Liquid / Chronic obstructive pulmonary disease / Cigarette smoke / Cigarette Smoking / Cigarettes / Classical pathway / Complement activation / COPD / Cyclic compounds / Development and progression / Diagnosis / Exposure / Health aspects / Inhalation / Laboratory animals / LC–MS/MS / Lung - metabolism / Lung diseases / Lung diseases, Obstructive / Mass spectrometry / Medicine / Medicine & Public Health / Nicotiana / Obstructive lung disease / Oxidative stress / Peptides / Pneumology/Respiratory System / Proteins / Proteome - metabolism / Proteomes / Proteomics / Pulmonary Disease, Chronic Obstructive - metabolism / Pulmonary fibrosis / Pulmonary functions / Rat model / Rats / Respiration / Respiratory function / Respiratory tract diseases / Scientific imaging / Smoke / Smoking / Tandem Mass Spectrometry / Thyroid / Urinary proteome / Urine