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Exploring New Functional Aspects of HTLV-1 RNA-Binding Protein Rex: How Does Rex Control Viral Replication?
by
Uchida, Koki
, Shin, Shuichi
, Nakano, Kazumi
, Tsuji, Kazuki
, Yokoyama, Koichi
, Tanaka, Marie
, Uchimaru, Kaoru
, Watanabe, Toshiki
in
alternative splicing analysis
/ B7-H1 Antigen - metabolism
/ Cell Line
/ Cell Nucleus - metabolism
/ data collection
/ DNA-Binding Proteins - genetics
/ DNA-Binding Proteins - metabolism
/ Efficiency
/ exons
/ Gene expression
/ Gene Expression Regulation, Viral
/ Gene Products, rex - metabolism
/ Gene regulation
/ Genomes
/ HTLV-1 Rex
/ HTLV-I Infections - metabolism
/ Human T-lymphotropic virus 1 - genetics
/ Humans
/ Infections
/ interactome
/ Labeling
/ Leukemia
/ Lymphocytes
/ Lymphocytes T
/ PD-L1
/ PD-L1 protein
/ phenotype
/ Phenotypes
/ Proteins
/ proviruses
/ PTB-Associated Splicing Factor - metabolism
/ Quality control
/ Replication
/ RNA Splicing
/ RNA, Messenger
/ RNA-binding protein
/ RNA-binding proteins
/ RNA-Binding Proteins - genetics
/ RNA-Binding Proteins - metabolism
/ Splicing
/ Structural proteins
/ T-lymphocytes
/ Transcription
/ transcriptome
/ Translation
/ viral genome expression
/ virion
/ virus replication
/ Virus Replication - genetics
2022
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Exploring New Functional Aspects of HTLV-1 RNA-Binding Protein Rex: How Does Rex Control Viral Replication?
by
Uchida, Koki
, Shin, Shuichi
, Nakano, Kazumi
, Tsuji, Kazuki
, Yokoyama, Koichi
, Tanaka, Marie
, Uchimaru, Kaoru
, Watanabe, Toshiki
in
alternative splicing analysis
/ B7-H1 Antigen - metabolism
/ Cell Line
/ Cell Nucleus - metabolism
/ data collection
/ DNA-Binding Proteins - genetics
/ DNA-Binding Proteins - metabolism
/ Efficiency
/ exons
/ Gene expression
/ Gene Expression Regulation, Viral
/ Gene Products, rex - metabolism
/ Gene regulation
/ Genomes
/ HTLV-1 Rex
/ HTLV-I Infections - metabolism
/ Human T-lymphotropic virus 1 - genetics
/ Humans
/ Infections
/ interactome
/ Labeling
/ Leukemia
/ Lymphocytes
/ Lymphocytes T
/ PD-L1
/ PD-L1 protein
/ phenotype
/ Phenotypes
/ Proteins
/ proviruses
/ PTB-Associated Splicing Factor - metabolism
/ Quality control
/ Replication
/ RNA Splicing
/ RNA, Messenger
/ RNA-binding protein
/ RNA-binding proteins
/ RNA-Binding Proteins - genetics
/ RNA-Binding Proteins - metabolism
/ Splicing
/ Structural proteins
/ T-lymphocytes
/ Transcription
/ transcriptome
/ Translation
/ viral genome expression
/ virion
/ virus replication
/ Virus Replication - genetics
2022
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Exploring New Functional Aspects of HTLV-1 RNA-Binding Protein Rex: How Does Rex Control Viral Replication?
by
Uchida, Koki
, Shin, Shuichi
, Nakano, Kazumi
, Tsuji, Kazuki
, Yokoyama, Koichi
, Tanaka, Marie
, Uchimaru, Kaoru
, Watanabe, Toshiki
in
alternative splicing analysis
/ B7-H1 Antigen - metabolism
/ Cell Line
/ Cell Nucleus - metabolism
/ data collection
/ DNA-Binding Proteins - genetics
/ DNA-Binding Proteins - metabolism
/ Efficiency
/ exons
/ Gene expression
/ Gene Expression Regulation, Viral
/ Gene Products, rex - metabolism
/ Gene regulation
/ Genomes
/ HTLV-1 Rex
/ HTLV-I Infections - metabolism
/ Human T-lymphotropic virus 1 - genetics
/ Humans
/ Infections
/ interactome
/ Labeling
/ Leukemia
/ Lymphocytes
/ Lymphocytes T
/ PD-L1
/ PD-L1 protein
/ phenotype
/ Phenotypes
/ Proteins
/ proviruses
/ PTB-Associated Splicing Factor - metabolism
/ Quality control
/ Replication
/ RNA Splicing
/ RNA, Messenger
/ RNA-binding protein
/ RNA-binding proteins
/ RNA-Binding Proteins - genetics
/ RNA-Binding Proteins - metabolism
/ Splicing
/ Structural proteins
/ T-lymphocytes
/ Transcription
/ transcriptome
/ Translation
/ viral genome expression
/ virion
/ virus replication
/ Virus Replication - genetics
2022
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Exploring New Functional Aspects of HTLV-1 RNA-Binding Protein Rex: How Does Rex Control Viral Replication?
Journal Article
Exploring New Functional Aspects of HTLV-1 RNA-Binding Protein Rex: How Does Rex Control Viral Replication?
2022
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Overview
After integration to the human genome as a provirus, human T-cell leukemia virus type 1 (HTLV-1) utilizes host T cell gene expression machinery for viral replication. The viral RNA-binding protein, Rex, is known to transport unspliced/incompletely spliced viral mRNAs encoding viral structural proteins out of the nucleus to enhance virus particle formation. However, the detailed mechanism of how Rex avoids extra splicing of unspliced/incompletely spliced viral mRNAs and stabilizes them for effective translation is still unclear. To elucidate the underlying molecular mechanism of Rex function, we comprehensively analyzed the changes in gene expression and splicing patterns in Rex-overexpressing T cells. In addition, we identified 81 human proteins interacting with Rex, involved in transcription, splicing, translation, and mRNA quality control. In particular, Rex interacts with NONO and SFPQ, which play important roles in the regulation of transcription and splicing. Accordingly, expression profiles and splicing patterns of a wide variety of genes are significantly changed in Rex-expressing T cells. Especially, the level of vPD-L1 mRNA that lacks the part of exon 4, thus encodes soluble PD-L1 was significantly increased in Rex-expressing cells. Overall, by integrated analysis of these three datasets, we showed for the first time that Rex intervenes the host gene expression machinery throughout the pathway, probably to escort viral unstable mRNAs from transcription (start) to translation (end). Upon exerting its function, Rex may alter the expression level and splicing patterns of various genes, thus influencing the phenotype of the host cell.
Publisher
MDPI AG,MDPI
Subject
/ DNA-Binding Proteins - genetics
/ DNA-Binding Proteins - metabolism
/ exons
/ Gene Expression Regulation, Viral
/ Gene Products, rex - metabolism
/ Genomes
/ HTLV-I Infections - metabolism
/ Human T-lymphotropic virus 1 - genetics
/ Humans
/ Labeling
/ Leukemia
/ PD-L1
/ Proteins
/ PTB-Associated Splicing Factor - metabolism
/ RNA-Binding Proteins - genetics
/ RNA-Binding Proteins - metabolism
/ Splicing
/ virion
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