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MassIVE.quant: a community resource of quantitative mass spectrometry–based proteomics datasets

by Teo, Guo Ci , Pavlou, Maria , Wollscheid, Bernd , Müller, Maik , Perez-Riverol, Yasset , Dunkley, Tom , Sabidó, Eduard , Bernhardt, Oliver M. , Muntel, Jan , Tzouros, Manuel , Chiva, Cristina , Carver, Jeremy , Bandeira, Nuno , Hüttenhain, Ruth , Reiter, Lukas , Tsai, Tsung-Heng , Pullman, Benjamin , Nesvizhskii, Alexey I. , Vitek, Olga , Goetze, Sandra , Verschueren, Erik , Huang, Ting , Choi, Meena

in 631/114/2402 / 631/114/794 / Algorithms / Bioinformatics / Biological Microscopy / Biological Techniques / Biomedical and Life Sciences / Biomedical Engineering/Biotechnology / Brief Communication / Computer applications / Computer science / Data acquisition / Databases, Protein / Datasets / Design of experiments / Fungal Proteins - chemistry / Ions / Life Sciences / Mass Spectrometry / Mass spectroscopy / Proteomics / Quantitative analysis / Repositories / Reproducibility of Results / Saccharomyces cerevisiae - metabolism / Scientific imaging / Software / Spectroscopy / Spectrum analysis / Workflow

2020

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MassIVE.quant: a community resource of quantitative mass spectrometry–based proteomics datasets

2020

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2020

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Journal Article

MassIVE.quant: a community resource of quantitative mass spectrometry–based proteomics datasets

Teo, Guo Ci,

Pavlou, Maria,

Wollscheid, Bernd,

Müller, Maik,

Perez-Riverol, Yasset,

Dunkley, Tom,

Sabidó, Eduard,

Bernhardt, Oliver M.,

Muntel, Jan,

Tzouros, Manuel,

Chiva, Cristina,

Carver, Jeremy,

Bandeira, Nuno,

Hüttenhain, Ruth,

Reiter, Lukas,

Tsai, Tsung-Heng,

Pullman, Benjamin,

Nesvizhskii, Alexey I.,

Vitek, Olga,

Goetze, Sandra,

Verschueren, Erik,

Huang, Ting,

Choi, Meena

2020

Overview

MassIVE.quant is a repository infrastructure and data resource for reproducible quantitative mass spectrometry–based proteomics, which is compatible with all mass spectrometry data acquisition types and computational analysis tools. A branch structure enables MassIVE.quant to systematically store raw experimental data, metadata of the experimental design, scripts of the quantitative analysis workflow, intermediate input and output files, as well as alternative reanalyses of the same dataset. MassIVE.quant is a data repository and data resource for reproducible quantitative mass spectrometry–based proteomics.

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Publisher

Nature Publishing Group US,Nature Publishing Group

Subject

/ Biological Microscopy

/ Biological Techniques

/ Biomedical and Life Sciences