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HDAC inhibitors induce transcriptional repression of high copy number genes in breast cancer through elongation blockade
by
Kim, Y J
, Kim, T H
, Cecchini, K R
, Greer, C B
, Harris, L N
, Tuck, D P
in
631/154/436/434
/ 631/208/514
/ 692/699/67/1347
/ 692/699/67/395
/ Analysis
/ Antimitotic agents
/ Antineoplastic agents
/ Antineoplastic Agents - pharmacology
/ Apoptosis
/ Breast cancer
/ Breast Neoplasms
/ Cell Biology
/ Cell Line, Tumor
/ Cell proliferation
/ Copy number
/ Cytotoxicity
/ DNA microarrays
/ DNA-directed RNA polymerase
/ Drug therapy
/ Elongation
/ ErbB-2 protein
/ Female
/ Gene Dosage
/ Gene Expression Regulation, Neoplastic - drug effects
/ Gene silencing
/ Gene Silencing - drug effects
/ Genes
/ Genetic aspects
/ Genetic variation
/ Genome, Human
/ Genomes
/ Histone deacetylase
/ Histone Deacetylase Inhibitors - pharmacology
/ Human Genetics
/ Humans
/ Hydroxamic Acids - pharmacology
/ Internal Medicine
/ Lethality
/ Medicine
/ Medicine & Public Health
/ Oligonucleotide Array Sequence Analysis
/ Oncogenes
/ Oncology
/ original-article
/ Physiological aspects
/ Receptor, ErbB-2 - genetics
/ Receptor, ErbB-2 - metabolism
/ RNA polymerase
/ RNA Polymerase II - antagonists & inhibitors
/ RNA Polymerase II - metabolism
/ RNA, Messenger - genetics
/ RNA, Messenger - metabolism
/ Transcription Elongation, Genetic - drug effects
/ Transcription Initiation, Genetic
/ Transcriptome
/ Tumors
2013
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HDAC inhibitors induce transcriptional repression of high copy number genes in breast cancer through elongation blockade
by
Kim, Y J
, Kim, T H
, Cecchini, K R
, Greer, C B
, Harris, L N
, Tuck, D P
in
631/154/436/434
/ 631/208/514
/ 692/699/67/1347
/ 692/699/67/395
/ Analysis
/ Antimitotic agents
/ Antineoplastic agents
/ Antineoplastic Agents - pharmacology
/ Apoptosis
/ Breast cancer
/ Breast Neoplasms
/ Cell Biology
/ Cell Line, Tumor
/ Cell proliferation
/ Copy number
/ Cytotoxicity
/ DNA microarrays
/ DNA-directed RNA polymerase
/ Drug therapy
/ Elongation
/ ErbB-2 protein
/ Female
/ Gene Dosage
/ Gene Expression Regulation, Neoplastic - drug effects
/ Gene silencing
/ Gene Silencing - drug effects
/ Genes
/ Genetic aspects
/ Genetic variation
/ Genome, Human
/ Genomes
/ Histone deacetylase
/ Histone Deacetylase Inhibitors - pharmacology
/ Human Genetics
/ Humans
/ Hydroxamic Acids - pharmacology
/ Internal Medicine
/ Lethality
/ Medicine
/ Medicine & Public Health
/ Oligonucleotide Array Sequence Analysis
/ Oncogenes
/ Oncology
/ original-article
/ Physiological aspects
/ Receptor, ErbB-2 - genetics
/ Receptor, ErbB-2 - metabolism
/ RNA polymerase
/ RNA Polymerase II - antagonists & inhibitors
/ RNA Polymerase II - metabolism
/ RNA, Messenger - genetics
/ RNA, Messenger - metabolism
/ Transcription Elongation, Genetic - drug effects
/ Transcription Initiation, Genetic
/ Transcriptome
/ Tumors
2013
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HDAC inhibitors induce transcriptional repression of high copy number genes in breast cancer through elongation blockade
by
Kim, Y J
, Kim, T H
, Cecchini, K R
, Greer, C B
, Harris, L N
, Tuck, D P
in
631/154/436/434
/ 631/208/514
/ 692/699/67/1347
/ 692/699/67/395
/ Analysis
/ Antimitotic agents
/ Antineoplastic agents
/ Antineoplastic Agents - pharmacology
/ Apoptosis
/ Breast cancer
/ Breast Neoplasms
/ Cell Biology
/ Cell Line, Tumor
/ Cell proliferation
/ Copy number
/ Cytotoxicity
/ DNA microarrays
/ DNA-directed RNA polymerase
/ Drug therapy
/ Elongation
/ ErbB-2 protein
/ Female
/ Gene Dosage
/ Gene Expression Regulation, Neoplastic - drug effects
/ Gene silencing
/ Gene Silencing - drug effects
/ Genes
/ Genetic aspects
/ Genetic variation
/ Genome, Human
/ Genomes
/ Histone deacetylase
/ Histone Deacetylase Inhibitors - pharmacology
/ Human Genetics
/ Humans
/ Hydroxamic Acids - pharmacology
/ Internal Medicine
/ Lethality
/ Medicine
/ Medicine & Public Health
/ Oligonucleotide Array Sequence Analysis
/ Oncogenes
/ Oncology
/ original-article
/ Physiological aspects
/ Receptor, ErbB-2 - genetics
/ Receptor, ErbB-2 - metabolism
/ RNA polymerase
/ RNA Polymerase II - antagonists & inhibitors
/ RNA Polymerase II - metabolism
/ RNA, Messenger - genetics
/ RNA, Messenger - metabolism
/ Transcription Elongation, Genetic - drug effects
/ Transcription Initiation, Genetic
/ Transcriptome
/ Tumors
2013
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HDAC inhibitors induce transcriptional repression of high copy number genes in breast cancer through elongation blockade
Journal Article
HDAC inhibitors induce transcriptional repression of high copy number genes in breast cancer through elongation blockade
2013
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Overview
Treatment with histone deacetylase inhibitors (HDACI) results in potent cytotoxicity of a variety of cancer cell types, and these drugs are used clinically to treat hematological tumors. They are known to repress the transcription of
ERBB2
and many other oncogenes, but little is known about this mechanism. Using global run-on sequencing (GRO-seq) to measure nascent transcription, we find that HDACI cause transcriptional repression by blocking RNA polymerase II elongation. Our data show that HDACI preferentially repress the transcription of highly expressed genes as well as high copy number genes in HER2+ breast cancer genomes. In contrast, genes that are activated by HDACI are moderately expressed. We analyzed gene copy number in combination with microarray and GRO-seq analysis of expression level, in normal and breast cancer cells to show that high copy number genes are more likely to be repressed by HDACI than non-amplified genes. The inhibition of transcription of amplified oncogenes, which promote survival and proliferation of cancer cells, might explain the cancer-specific lethality of HDACI, and may represent a general therapeutic strategy for cancer.
Publisher
Nature Publishing Group UK,Nature Publishing Group
Subject
/ Analysis
/ Antineoplastic Agents - pharmacology
/ Female
/ Gene Expression Regulation, Neoplastic - drug effects
/ Gene Silencing - drug effects
/ Genes
/ Genomes
/ Histone Deacetylase Inhibitors - pharmacology
/ Humans
/ Hydroxamic Acids - pharmacology
/ Medicine
/ Oligonucleotide Array Sequence Analysis
/ Oncology
/ Receptor, ErbB-2 - metabolism
/ RNA Polymerase II - antagonists & inhibitors
/ RNA Polymerase II - metabolism
/ Transcription Elongation, Genetic - drug effects
/ Transcription Initiation, Genetic
/ Tumors
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