Journal Article

Height-reducing variants and selection for short stature in Sardinia

Cucca, Francesco, Biino, Ginevra, Nagaraja, Ramaiah, Marongiu, Michele, Jones, Chris, Schlessinger, David, Vaccargiu, Simona, Floris, Matteo, Sanna, Serena, Zeggini, Eleftheria, Busonero, Fabio, Maschio, Andrea, Chiang, Charleston W K, Delitala, Alessandro, Timpson, Nicholas J, Murgia, Federico, Uzzau, Sergio, Angius, Andrea, Sidore, Carlo, Steri, Maristella, Lohmueller, Kirk E, Concas, Maria Pina, Marcus, Joseph H, Zoledziewska, Magdalena, Lyons, Robert, Meloni, Antonella, Novembre, John, Mulas, Antonella, Dedoussis, George, Soranzo, Nicole, Del Vecchyo, Diego Ortega, Tachmazidou, Ioanna, Abecasis, Gonçalo R

2015

Overview

Francesco Cucca, David Schlessinger, John Novembre, Gonçalo Abecasis and colleagues present sequencing-based whole-genome association analyses for stature in Sardinia and identify two variants that lead to reduced height. Their findings suggest that shorter stature was selected for in Sardinia. We report sequencing-based whole-genome association analyses to evaluate the impact of rare and founder variants on stature in 6,307 individuals on the island of Sardinia. We identify two variants with large effects. One variant, which introduces a stop codon in the GHR gene, is relatively frequent in Sardinia (0.87% versus <0.01% elsewhere) and in the homozygous state causes Laron syndrome involving short stature. We find that this variant reduces height in heterozygotes by an average of 4.2 cm (−0.64 s.d.). The other variant, in the imprinted KCNQ1 gene (minor allele frequency (MAF) = 7.7% in Sardinia versus <1% elsewhere) reduces height by an average of 1.83 cm (−0.31 s.d.) when maternally inherited. Additionally, polygenic scores indicate that known height-decreasing alleles are at systematically higher frequencies in Sardinians than would be expected by genetic drift. The findings are consistent with selection for shorter stature in Sardinia and a suggestive human example of the proposed 'island effect' reducing the size of large mammals.

• Publisher: Nature Publishing Group US,Nature Publishing Group
• Subject: 45/23 / 45/43 / 45/61 / 45/77 / 631/208/205/2138 / 631/208/457 / Adult / Aged / Aged, 80 and over / Agriculture / Animal Genetics and Genomics / Biomedicine / Body Height - genetics / Cancer Research / Carrier Proteins - genetics / Consortia / Female / Founder Effect / Funding / Gene Frequency / Gene Function / Genetic aspects / Genetic drift / Genetic research / Genetic Variation / Genome-Wide Association Study - methods / Genomes / Genotype / Grants / Growth hormones / Haplotypes / High-Throughput Nucleotide Sequencing - methods / Human Genetics / Humans / Identification and classification / Islands / Italy / KCNQ1 Potassium Channel - genetics / Laron Syndrome - genetics / letter / Longitudinal Studies / Male / Middle Aged / Mutation / Population / Population genetics / Sardinians / Selection, Genetic / Stature, Short / Young Adult