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Structure of PINK1 in complex with its substrate ubiquitin
by
Schubert, Alexander F.
, Maslen, Sarah L.
, Gladkova, Christina
, Komander, David
, Pardon, Els
, Freund, Stefan M. V.
, Steyaert, Jan
, Wagstaff, Jane L.
in
631/337/458/1733
/ 631/337/458/582
/ 631/45/535/1266
/ 631/80/304
/ 82
/ 82/83
/ Animals
/ Basal ganglia
/ Binding Sites
/ Central nervous system diseases
/ Crystal structure
/ Crystallography, X-Ray
/ Gene mutation
/ Genes
/ Genetic aspects
/ Health aspects
/ Humanities and Social Sciences
/ Kinases
/ Mitophagy
/ Models, Molecular
/ Movement disorders
/ multidisciplinary
/ Mutation
/ Nanobodies
/ Parkin protein
/ Parkinson disease
/ Parkinson's disease
/ Pediculus - enzymology
/ Pediculus humanus
/ Phosphorylation
/ Protein kinase
/ Protein Kinases - chemistry
/ Protein Kinases - genetics
/ Protein Kinases - immunology
/ Protein Kinases - metabolism
/ Proteins
/ PTEN-induced putative kinase
/ Science
/ Single-Chain Antibodies - chemistry
/ Single-Chain Antibodies - immunology
/ Substrates
/ Ubiquitin
/ Ubiquitin - chemistry
/ Ubiquitin - metabolism
/ Ubiquitin-protein ligase
2017
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Structure of PINK1 in complex with its substrate ubiquitin
by
Schubert, Alexander F.
, Maslen, Sarah L.
, Gladkova, Christina
, Komander, David
, Pardon, Els
, Freund, Stefan M. V.
, Steyaert, Jan
, Wagstaff, Jane L.
in
631/337/458/1733
/ 631/337/458/582
/ 631/45/535/1266
/ 631/80/304
/ 82
/ 82/83
/ Animals
/ Basal ganglia
/ Binding Sites
/ Central nervous system diseases
/ Crystal structure
/ Crystallography, X-Ray
/ Gene mutation
/ Genes
/ Genetic aspects
/ Health aspects
/ Humanities and Social Sciences
/ Kinases
/ Mitophagy
/ Models, Molecular
/ Movement disorders
/ multidisciplinary
/ Mutation
/ Nanobodies
/ Parkin protein
/ Parkinson disease
/ Parkinson's disease
/ Pediculus - enzymology
/ Pediculus humanus
/ Phosphorylation
/ Protein kinase
/ Protein Kinases - chemistry
/ Protein Kinases - genetics
/ Protein Kinases - immunology
/ Protein Kinases - metabolism
/ Proteins
/ PTEN-induced putative kinase
/ Science
/ Single-Chain Antibodies - chemistry
/ Single-Chain Antibodies - immunology
/ Substrates
/ Ubiquitin
/ Ubiquitin - chemistry
/ Ubiquitin - metabolism
/ Ubiquitin-protein ligase
2017
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Structure of PINK1 in complex with its substrate ubiquitin
by
Schubert, Alexander F.
, Maslen, Sarah L.
, Gladkova, Christina
, Komander, David
, Pardon, Els
, Freund, Stefan M. V.
, Steyaert, Jan
, Wagstaff, Jane L.
in
631/337/458/1733
/ 631/337/458/582
/ 631/45/535/1266
/ 631/80/304
/ 82
/ 82/83
/ Animals
/ Basal ganglia
/ Binding Sites
/ Central nervous system diseases
/ Crystal structure
/ Crystallography, X-Ray
/ Gene mutation
/ Genes
/ Genetic aspects
/ Health aspects
/ Humanities and Social Sciences
/ Kinases
/ Mitophagy
/ Models, Molecular
/ Movement disorders
/ multidisciplinary
/ Mutation
/ Nanobodies
/ Parkin protein
/ Parkinson disease
/ Parkinson's disease
/ Pediculus - enzymology
/ Pediculus humanus
/ Phosphorylation
/ Protein kinase
/ Protein Kinases - chemistry
/ Protein Kinases - genetics
/ Protein Kinases - immunology
/ Protein Kinases - metabolism
/ Proteins
/ PTEN-induced putative kinase
/ Science
/ Single-Chain Antibodies - chemistry
/ Single-Chain Antibodies - immunology
/ Substrates
/ Ubiquitin
/ Ubiquitin - chemistry
/ Ubiquitin - metabolism
/ Ubiquitin-protein ligase
2017
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Structure of PINK1 in complex with its substrate ubiquitin
Journal Article
Structure of PINK1 in complex with its substrate ubiquitin
2017
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Overview
Autosomal-recessive juvenile Parkinsonism (AR-JP) is caused by mutations in a number of PARK genes, in particular the genes encoding the E3 ubiquitin ligase Parkin (
PARK2
, also known as
PRKN
) and its upstream protein kinase PINK1 (also known as
PARK6
). PINK1 phosphorylates both ubiquitin and the ubiquitin-like domain of Parkin on structurally protected Ser65 residues, triggering mitophagy. Here we report a crystal structure of a nanobody-stabilized complex containing
Pediculus humanus corporis
(
Ph
)PINK1 bound to ubiquitin in the ‘C-terminally retracted’ (Ub-CR) conformation. The structure reveals many peculiarities of PINK1, including the architecture of the C-terminal region, and reveals how the N lobe of PINK1 binds ubiquitin via a unique insertion. The flexible Ser65 loop in the Ub-CR conformation contacts the activation segment, facilitating placement of Ser65 in a phosphate-accepting position. The structure also explains how autophosphorylation in the N lobe stabilizes structurally and functionally important insertions, and reveals the molecular basis of AR-JP-causing mutations, some of which disrupt ubiquitin binding.
Stabilization of a transient protein kinase–substrate complex using a nanobody provides molecular details about how the Parkinson’s disease-linked protein kinase PINK1 phosphorylates ubiquitin, and suggests new pharmacological strategies.
A study in PINK1
The kinase enzyme PINK1 is known mainly for two reasons. At an organism level, mutations of PINK1 have been associated with autosomal-recessive juvenile Parkinsonism (AR-JP). At a cellular level, PINK1 phosphorylates both ubiquitin and a ubiquitin-like domain within its partner enzyme Parkin to trigger mitophagy, the process by which cells get rid of dysfunctional mitochondria. David Komander and co-authors report the structure of a complex between louse PINK1 and ubiquitin, which they obtained using nanobody-based stabilization. The structure provides molecular insights not only into PINK1–ubiquitin interactions and therefore the mechanism of PINK1 activity, but also into AR-JP-associated mutations, some of which disrupt ubiquitin binding.
Publisher
Nature Publishing Group UK,Nature Publishing Group
Subject
/ 82
/ 82/83
/ Animals
/ Central nervous system diseases
/ Genes
/ Humanities and Social Sciences
/ Kinases
/ Mutation
/ Protein Kinases - immunology
/ Protein Kinases - metabolism
/ Proteins
/ PTEN-induced putative kinase
/ Science
/ Single-Chain Antibodies - chemistry
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