Journal Article

Quantitative N-glycoproteomics reveals altered glycosylation levels of various plasma proteins in bloodstream infected patients

Järvinen, Asko, Saraswat, Shruti, Kaartinen, Johanna, Saraswat, Mayank, Joenvaara, Sakari, Renkonen, Risto, Kuusela, Pentti, Agarwal, Rahul

2018

Overview

Bloodstream infections are associated with high morbidity and mortality with rates varying from 10-25% and higher. Appropriate and timely onset of antibiotic therapy influences the prognosis of these patients. It requires the diagnostic accuracy which is not afforded by current gold standards such as blood culture. Moreover, the time from blood sampling to blood culture results is a key determinant of reducing mortality. No established biomarkers exist which can differentiate bloodstream infections from other systemic inflammatory conditions. This calls for studies on biomarkers potential of molecular profiling of plasma as it is affected most by the molecular changes accompanying bloodstream infections. N-glycosylation is a post-translational modification which is very sensitive to changes in physiology. Here we have performed targeted quantitative N-glycoproteomics from plasma samples of patients with confirmed positive blood culture together with age and sex matched febrile controls with negative blood culture reports. Three hundred and sixty eight potential N-glycopeptides were quantified by mass spectrometry and 149 were further selected for identification. Twenty four N-glycopeptides were identified with high confidence together with elucidation of the peptide sequence, N-glycosylation site, glycan composition and proposed glycan structures. Principal component analysis, orthogonal projections to latent structures-discriminant analysis (S-Plot) and self-organizing maps clustering among other statistical methods were employed to analyze the data. These methods gave us clear separation of the two patient classes. We propose high-confidence N-glycopeptides which have the power to separate the bloodstream infections from blood culture negative febrile patients and shed light on host response during bacteremia. Data are available via ProteomeXchange with identifier PXD009048.

• Publisher: Public Library of Science,Public Library of Science (PLoS)
• Subject: Aged / Aged, 80 and over / Antibiotics / Bacteremia / Bacteremia - blood / Bacteremia - metabolism / Bacterial infections / Biology and Life Sciences / Biomarkers / Blood / Blood culture / Blood Proteins - metabolism / Clustering / Confidence / Culture / Data processing / Development and progression / Diagnostic systems / Discriminant analysis / Disease / Female / Genetic aspects / Glycan / Glycopeptides / Glycopeptides - blood / Glycopeptides - metabolism / Glycoproteins / Glycosylation / Hospitals / Humans / Immunoglobulins / Immunology / Infections / Inflammation / Laboratories / Male / Mass spectrometry / Mass spectroscopy / Medicine and Health Sciences / Middle Aged / Morbidity / Mortality / Patients / Peptides / Physical Sciences / Physiological aspects / Physiology / Plasma proteins / Post-translation / Principal components analysis / Prognosis / Protein Processing, Post-Translational / Proteins / Proteomics / Research and Analysis Methods / Self organizing maps / Sepsis / Statistical analysis / Statistical methods