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DNA barcoding of odonates from the Upper Plata basin: Database creation and genetic diversity estimation

by Roque, Fabio de Oliveira , Kvist, Sebastian , Koroiva, Ricardo , Pepinelli, Mateus , Rodrigues, Marciel Elio , Lorenz-Lemke, Aline Pedroso

in Accuracy / Animals / Bar codes / Biodiversity / Biology and life sciences / Brazil / Computer and information sciences / Conservation / Cytochrome / Cytochrome c / Cytochrome-c oxidase / Databases, Genetic / Deoxyribonucleic acid / DNA / DNA barcoding / DNA Barcoding, Taxonomic / Ecology / Ecology and Environmental Sciences / Electron Transport Complex IV - genetics / Evolutionary biology / Gene sequencing / Genetic diversity / Genetic Variation / Geography / Hot spots / Identification / Interspecific / Mitochondrial DNA / Morphology / Odonata / Odonata - genetics / Oxidase / People and places / Phylogeny / Research and analysis methods / Sequence Analysis, DNA / Species Specificity / Taxonomy / Wildlife conservation

2017

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DNA barcoding of odonates from the Upper Plata basin: Database creation and genetic diversity estimation

by Roque, Fabio de Oliveira , Kvist, Sebastian , Koroiva, Ricardo , Pepinelli, Mateus , Rodrigues, Marciel Elio , Lorenz-Lemke, Aline Pedroso

2017

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DNA barcoding of odonates from the Upper Plata basin: Database creation and genetic diversity estimation

by Roque, Fabio de Oliveira , Kvist, Sebastian , Koroiva, Ricardo , Pepinelli, Mateus , Rodrigues, Marciel Elio , Lorenz-Lemke, Aline Pedroso

2017

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Journal Article

DNA barcoding of odonates from the Upper Plata basin: Database creation and genetic diversity estimation

Roque, Fabio de Oliveira,

Kvist, Sebastian,

Koroiva, Ricardo,

Pepinelli, Mateus,

Rodrigues, Marciel Elio,

Lorenz-Lemke, Aline Pedroso

2017

Overview

We present a DNA barcoding study of Neotropical odonates from the Upper Plata basin, Brazil. A total of 38 species were collected in a transition region of \"Cerrado\" and Atlantic Forest, both regarded as biological hotspots, and 130 cytochrome c oxidase subunit I (COI) barcodes were generated for the collected specimens. The distinct gap between intraspecific (0-2%) and interspecific variation (15% and above) in COI, and resulting separation of Barcode Index Numbers (BIN), allowed for successful identification of specimens in 94% of cases. The 6% fail rate was due to a shared BIN between two separate nominal species. DNA barcoding, based on COI, thus seems to be a reliable and efficient tool for identifying Neotropical odonate specimens down to the species level. These results underscore the utility of DNA barcoding to aid specimen identification in diverse biological hotspots, areas that require urgent action regarding taxonomic surveys and biodiversity conservation.

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Publisher

Public Library of Science,Public Library of Science (PLoS)

Subject

Accuracy

/ Animals

/ Bar codes

/ Biodiversity

/ Biology and life sciences

/ Brazil

/ Computer and information sciences