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Convergent losses of decay mechanisms and rapid turnover of symbiosis genes in mycorrhizal mutualists

by Lipzen, Anna , Nehls, Uwe , Ohm, Robin A , Labutti, Kurt , Department of Ecology, Biology/Chemistry, Botany, ; Universität Bremen [Deutschland] = University of Bremen [Germany] = Université de Brême [Allemagne] , Department of Biological Sciences ; King Abdulaziz University , Plett, Jonathan M , Salamov, Asaf , Zuccaro, Alga , Floudas, Dimitrios , Department of Soil Ecology ; BITÖK , Choi, Cindy , Department of Biosciences ; Karolinska Institutet [Stockholm] , Marmeisse, Roland , Henrissat, Bernard , Girlanda, Mariangela , Högberg, Nils , Lindquist, Erika A , Universität zu Köln = University of Cologne , Hungarian Academy of Sciences (MTA) , Tritt, Andrew , Dore, Jeanne , Cichocki, Nicolas , Departamento de Microbiologia ; Universidade Federal de Viçosa [Brasil] = Federal University of Viçosa [Brazil] = Université fédérale de Viçosa [Brésil] (UFV [Brésil])-Bolsista do Conselho Nacional de Desenvolvimento Científico e Tecnológico (CNPq) , Riley, Robert , Buscot, Francois , Canbäck, Björn , Grigoriev, Igor V , Department of Forest Mycology and Plant Pathology ; Swedish

in 38 / 38/91 / 45 / 45/23 / 631/326 / Agriculture / Animal Genetics and Genomics / Base Sequence / BASIC BIOLOGICAL SCIENCES / Biologi / Biological Sciences / Biologiska vetenskaper / Biomedicine / Cancer Research / Cellulose / Enzymes / Evolution, Molecular / Evolutionary Biology / Evolutionary genetics / Evolutionsbiologi / Fungi / Gene Deletion / Gene Expression Regulation, Fungal - genetics / Gene Function / Genes / Genetic aspects / Genetic research / Genetics / Genetics and Genomics / Genetik / Genetik och genomik / Genome, Fungal - genetics / Genomes / Genomics / Human Genetics / Laboratories / letter / Lignin / Lignocellulose / Molecular Sequence Data / Mycorrhizae - genetics / Mycorrhizae - pathogenicity / Mycorrhizas / Natural Sciences / Naturvetenskap / Phylogeny / Plant Diseases - genetics / Plant Diseases - microbiology / Plant Roots - microbiology / Selection, Genetic / Symbiosis / Symbiosis - genetics / Trees / Virulence - genetics

2015

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Convergent losses of decay mechanisms and rapid turnover of symbiosis genes in mycorrhizal mutualists

2015

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2015

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Journal Article

Convergent losses of decay mechanisms and rapid turnover of symbiosis genes in mycorrhizal mutualists

Lipzen, Anna,

Nehls, Uwe,

Ohm, Robin A,

Labutti, Kurt,

Department of Ecology, Biology/Chemistry, Botany, ; Universität Bremen [Deutschland] = University of Bremen [Germany] = Université de Brême [Allemagne],

Department of Biological Sciences ; King Abdulaziz University,

Plett, Jonathan M,

Salamov, Asaf,

Zuccaro, Alga,

Floudas, Dimitrios,

Department of Soil Ecology ; BITÖK,

Choi, Cindy,

Department of Biosciences ; Karolinska Institutet [Stockholm],

Marmeisse, Roland,

Henrissat, Bernard,

Girlanda, Mariangela,

Högberg, Nils,

Lindquist, Erika A,

Universität zu Köln = University of Cologne,

Hungarian Academy of Sciences (MTA),

Tritt, Andrew,

Dore, Jeanne,

Cichocki, Nicolas,

Departamento de Microbiologia ; Universidade Federal de Viçosa [Brasil] = Federal University of Viçosa [Brazil] = Université fédérale de Viçosa [Brésil] (UFV [Brésil])-Bolsista do Conselho Nacional de Desenvolvimento Científico e Tecnológico (CNPq),

Riley, Robert,

Buscot, Francois,

Canbäck, Björn,

Grigoriev, Igor V,

Department of Forest Mycology and Plant Pathology ; Swedish

2015

Overview

To elucidate the genetic bases of mycorrhizal lifestyle evolution, we sequenced new fungal genomes, including 13 ectomycorrhizal (ECM), orchid (ORM) and ericoid (ERM) species, and five saprotrophs, which we analyzed along with other fungal genomes. Ectomycorrhizal fungi have a reduced complement of genes encoding plant cell wall-degrading enzymes (PCWDEs), as compared to their ancestral wood decayers. Nevertheless, they have retained a unique array of PCWDEs, thus suggesting that they possess diverse abilities to decompose lignocellulose. Similar functional categories of nonorthologous genes are induced in symbiosis. Of induced genes, 7-38% are orphan genes, including genes that encode secreted effector-like proteins. Convergent evolution of the mycorrhizal habit in fungi occurred via the repeated evolution of a 'symbiosis toolkit', with reduced numbers of PCWDEs and lineage-specific suites of mycorrhiza-induced genes.

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Publisher

Nature Publishing Group,CCSD,Nature Publishing Group US

Subject

/ 38/91

/ 45

/ 45/23

/ 631/326

/ Agriculture

/ Animal Genetics and Genomics

/ Base Sequence