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Quantitative Determination of Size and Shape of Surface-Bound DNA Using an Acoustic Wave Sensor
by
Tsortos, Achilleas
, Papadakis, George
, Mitsakakis, Konstantinos
, Gizeli, Electra
, Melzak, Kathryn A.
in
Acoustics
/ Acoustics - instrumentation
/ Binding
/ Biological
/ Biosensing Techniques - instrumentation
/ Biosensing Techniques - methods
/ Biotin
/ Chains
/ Deoxyribonucleic acid
/ Devices
/ DNA
/ DNA - chemistry
/ DNA - ultrastructure
/ Energy dissipation
/ Equipment Design
/ Equipment Failure Analysis
/ Histones
/ Microelectrodes
/ Molecular biology
/ Molecular Weight
/ Molecules
/ Nucleic Acids
/ Sensors
/ Therapy
/ Transducers
2008
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Quantitative Determination of Size and Shape of Surface-Bound DNA Using an Acoustic Wave Sensor
by
Tsortos, Achilleas
, Papadakis, George
, Mitsakakis, Konstantinos
, Gizeli, Electra
, Melzak, Kathryn A.
in
Acoustics
/ Acoustics - instrumentation
/ Binding
/ Biological
/ Biosensing Techniques - instrumentation
/ Biosensing Techniques - methods
/ Biotin
/ Chains
/ Deoxyribonucleic acid
/ Devices
/ DNA
/ DNA - chemistry
/ DNA - ultrastructure
/ Energy dissipation
/ Equipment Design
/ Equipment Failure Analysis
/ Histones
/ Microelectrodes
/ Molecular biology
/ Molecular Weight
/ Molecules
/ Nucleic Acids
/ Sensors
/ Therapy
/ Transducers
2008
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Quantitative Determination of Size and Shape of Surface-Bound DNA Using an Acoustic Wave Sensor
by
Tsortos, Achilleas
, Papadakis, George
, Mitsakakis, Konstantinos
, Gizeli, Electra
, Melzak, Kathryn A.
in
Acoustics
/ Acoustics - instrumentation
/ Binding
/ Biological
/ Biosensing Techniques - instrumentation
/ Biosensing Techniques - methods
/ Biotin
/ Chains
/ Deoxyribonucleic acid
/ Devices
/ DNA
/ DNA - chemistry
/ DNA - ultrastructure
/ Energy dissipation
/ Equipment Design
/ Equipment Failure Analysis
/ Histones
/ Microelectrodes
/ Molecular biology
/ Molecular Weight
/ Molecules
/ Nucleic Acids
/ Sensors
/ Therapy
/ Transducers
2008
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Quantitative Determination of Size and Shape of Surface-Bound DNA Using an Acoustic Wave Sensor
Journal Article
Quantitative Determination of Size and Shape of Surface-Bound DNA Using an Acoustic Wave Sensor
2008
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Overview
DNA bending plays a significant role in many biological processes, such as gene regulation, DNA replication, and chromosomal packing. Understanding how such processes take place and how they can, in turn, be regulated by artificial agents for individual oriented therapies is of importance to both biology and medicine. In this work, we describe the application of an acoustic wave device for characterizing the conformation of DNA molecules tethered to the device surface via a biotin-neutravidin interaction. The acoustic energy dissipation per unit mass observed upon DNA binding is directly related to DNA intrinsic viscosity, providing quantitative information on the size and shape of the tethered molecules. The validity of the above approach was verified by showing that the predesigned geometries of model double-stranded and triple-helix DNA molecules could be quantitatively distinguished: the resolution of the acoustic measurements is sufficient to allow discrimination between same size DNA carrying a bent at different positions along the chain. Furthermore, the significance of this analysis to the study of biologically relevant systems is shown during the evaluation of DNA conformational change upon protein (histone) binding.
Publisher
Elsevier Inc,Biophysical Society,The Biophysical Society
Subject
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