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A Chromosome-scale Genome Assembly for the Broad-leaved Bamboo Indocalamus tessellatus

by Liu, Xianshixuan , Wu, Yingjun , Jin, Aiwu , Zheng, Weicheng , Hu, Xiaoqing , Xu, Qian , Zhu, Qianggen , Zhou, Chenjie , Qiu, Weiqing , Luo, Site , Deng, Xianjun , Wang, Yikun , Chen, Daomin , Yan, Xiaofang , Chen, Zhe

in 631/208/726 / 631/449 / Chromosomes / Chromosomes, Plant / Data Descriptor / Genes / Genome, Plant / Genomes / Genomics / Humanities and Social Sciences / Indocalamus tessellatus / Leaves / Morphology / multidisciplinary / Poaceae - genetics / Proteins / Science / Science (multidisciplinary)

2025

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A Chromosome-scale Genome Assembly for the Broad-leaved Bamboo Indocalamus tessellatus

2025

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2025

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Journal Article

A Chromosome-scale Genome Assembly for the Broad-leaved Bamboo Indocalamus tessellatus

Liu, Xianshixuan,

Wu, Yingjun,

Jin, Aiwu,

Zheng, Weicheng,

Hu, Xiaoqing,

Xu, Qian,

Zhu, Qianggen,

Zhou, Chenjie,

Qiu, Weiqing,

Luo, Site,

Deng, Xianjun,

Wang, Yikun,

Chen, Daomin,

Yan, Xiaofang,

Chen, Zhe

2025

Overview

Indocalamus tessellatus , a broad-leaved bamboo species, holds significant economic and ecological value. However, the absence of a high-quality reference genome has constrained genetic and functional studies of this species. Here, we report a chromosome-scale genome assembly of I. tessellatus , constructed by integrating PacBio HiFi and Hi-C sequencing technologies. The final assembly is 2.89 Gb with a scaffold N50 of 117.66 Mb. BUSCO assessment against the poales_odb10 dataset revealed 99.0% completeness, indicating the high quality of the assembly. Additionally, a total of 41,765 protein-coding genes were predicted, offering a critical resource for functional annotation and comparative genomics. This reference genome establishes a foundation for studies on I. tessellatus biology, breeding, and conservation.

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Publisher

Nature Publishing Group UK,Nature Publishing Group,Nature Portfolio

Subject

/ 631/449

/ Genes