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The complete mitochondrial genome of medicinal fungus Taiwanofungus camphoratus reveals gene rearrangements and intron dynamics of Polyporales
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The complete mitochondrial genome of medicinal fungus Taiwanofungus camphoratus reveals gene rearrangements and intron dynamics of Polyporales
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Journal Article
The complete mitochondrial genome of medicinal fungus Taiwanofungus camphoratus reveals gene rearrangements and intron dynamics of Polyporales
2020
Overview
Taiwanofungus camphoratus
is a highly valued medicinal mushroom that is endemic to Taiwan, China. In the present study, the mitogenome of
T. camphoratus
was assembled and compared with other published
Polyporales
mitogenomes. The
T. camphoratus
mitogenome was composed of circular DNA molecules, with a total size of 114,922 bp. Genome collinearity analysis revealed large-scale gene rearrangements between the mitogenomes of
Polyporales
, and
T. camphoratus
contained a unique gene order. The number and classes of introns were highly variable in 12
Polyporales
species we examined, which proved that numerous intron loss or gain events occurred in the evolution of
Polyporales
. The Ka/Ks values for most core protein coding genes in
Polyporales
species were less than 1, indicating that these genes were subject to purifying selection. However, the
rps3
gene was found under positive or relaxed selection between some
Polyporales
species. Phylogenetic analysis based on the combined mitochondrial gene set obtained a well-supported topology, and
T. camphoratus
was identified as a sister species to
Laetiporus sulphureus
. This study served as the first report on the mitogenome in the
Taiwanofungus
genus, which will provide a basis for understanding the phylogeny and evolution of this important fungus.
Publisher
Nature Publishing Group UK,Nature Publishing Group
