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Depiction of the genomic and genetic landscape identifies CCL5 as a protective factor in colorectal neuroendocrine carcinoma
by
Zhou, Xiaohu
, Ding, Yongfeng
, Chen, Dong
, Zheng, Yi
, Li, Xiaolin
, Cheng, Xiaofei
, Fang, Weijia
, Li, Benfeng
, Zhang, Min
, Zhang, Hangyu
, Wang, Saisai
, Tong, Zhou
, Ruan, Jian
, Bao, Xuanwen
, Zhao, Peng
, Zhang, Ruyi
, Liu, Lulu
in
631/67/68/2486
/ 631/67/69
/ Adult
/ Aged
/ Aged, 80 and over
/ Biomedical and Life Sciences
/ Biomedicine
/ Cancer Research
/ Carcinoma, Neuroendocrine - genetics
/ Carcinoma, Neuroendocrine - immunology
/ CD8 antigen
/ CD8-Positive T-Lymphocytes - immunology
/ Chemokine CCL5 - genetics
/ Colorectal carcinoma
/ Colorectal Neoplasms - genetics
/ Colorectal Neoplasms - immunology
/ Drug Resistance
/ Endothelial cells
/ Epidemiology
/ Female
/ Gene Expression Profiling - methods
/ Gene Expression Regulation, Neoplastic
/ Genomics
/ Genomics - methods
/ Humans
/ Immunofluorescence
/ Immunotherapy
/ Lymphocytes T
/ Male
/ Medical prognosis
/ Metastases
/ Middle Aged
/ Molecular Medicine
/ Mutation
/ Neuroendocrine tumors
/ Neuroendocrine Tumors - genetics
/ Neuroendocrine Tumors - immunology
/ Oncology
/ Pax5 protein
/ Polymerase chain reaction
/ Prognosis
/ Reverse transcription
/ Survival Analysis
/ Transcriptomes
/ Tumor Microenvironment
/ Tumors
/ Young Adult
2021
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Depiction of the genomic and genetic landscape identifies CCL5 as a protective factor in colorectal neuroendocrine carcinoma
by
Zhou, Xiaohu
, Ding, Yongfeng
, Chen, Dong
, Zheng, Yi
, Li, Xiaolin
, Cheng, Xiaofei
, Fang, Weijia
, Li, Benfeng
, Zhang, Min
, Zhang, Hangyu
, Wang, Saisai
, Tong, Zhou
, Ruan, Jian
, Bao, Xuanwen
, Zhao, Peng
, Zhang, Ruyi
, Liu, Lulu
in
631/67/68/2486
/ 631/67/69
/ Adult
/ Aged
/ Aged, 80 and over
/ Biomedical and Life Sciences
/ Biomedicine
/ Cancer Research
/ Carcinoma, Neuroendocrine - genetics
/ Carcinoma, Neuroendocrine - immunology
/ CD8 antigen
/ CD8-Positive T-Lymphocytes - immunology
/ Chemokine CCL5 - genetics
/ Colorectal carcinoma
/ Colorectal Neoplasms - genetics
/ Colorectal Neoplasms - immunology
/ Drug Resistance
/ Endothelial cells
/ Epidemiology
/ Female
/ Gene Expression Profiling - methods
/ Gene Expression Regulation, Neoplastic
/ Genomics
/ Genomics - methods
/ Humans
/ Immunofluorescence
/ Immunotherapy
/ Lymphocytes T
/ Male
/ Medical prognosis
/ Metastases
/ Middle Aged
/ Molecular Medicine
/ Mutation
/ Neuroendocrine tumors
/ Neuroendocrine Tumors - genetics
/ Neuroendocrine Tumors - immunology
/ Oncology
/ Pax5 protein
/ Polymerase chain reaction
/ Prognosis
/ Reverse transcription
/ Survival Analysis
/ Transcriptomes
/ Tumor Microenvironment
/ Tumors
/ Young Adult
2021
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Depiction of the genomic and genetic landscape identifies CCL5 as a protective factor in colorectal neuroendocrine carcinoma
by
Zhou, Xiaohu
, Ding, Yongfeng
, Chen, Dong
, Zheng, Yi
, Li, Xiaolin
, Cheng, Xiaofei
, Fang, Weijia
, Li, Benfeng
, Zhang, Min
, Zhang, Hangyu
, Wang, Saisai
, Tong, Zhou
, Ruan, Jian
, Bao, Xuanwen
, Zhao, Peng
, Zhang, Ruyi
, Liu, Lulu
in
631/67/68/2486
/ 631/67/69
/ Adult
/ Aged
/ Aged, 80 and over
/ Biomedical and Life Sciences
/ Biomedicine
/ Cancer Research
/ Carcinoma, Neuroendocrine - genetics
/ Carcinoma, Neuroendocrine - immunology
/ CD8 antigen
/ CD8-Positive T-Lymphocytes - immunology
/ Chemokine CCL5 - genetics
/ Colorectal carcinoma
/ Colorectal Neoplasms - genetics
/ Colorectal Neoplasms - immunology
/ Drug Resistance
/ Endothelial cells
/ Epidemiology
/ Female
/ Gene Expression Profiling - methods
/ Gene Expression Regulation, Neoplastic
/ Genomics
/ Genomics - methods
/ Humans
/ Immunofluorescence
/ Immunotherapy
/ Lymphocytes T
/ Male
/ Medical prognosis
/ Metastases
/ Middle Aged
/ Molecular Medicine
/ Mutation
/ Neuroendocrine tumors
/ Neuroendocrine Tumors - genetics
/ Neuroendocrine Tumors - immunology
/ Oncology
/ Pax5 protein
/ Polymerase chain reaction
/ Prognosis
/ Reverse transcription
/ Survival Analysis
/ Transcriptomes
/ Tumor Microenvironment
/ Tumors
/ Young Adult
2021
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Depiction of the genomic and genetic landscape identifies CCL5 as a protective factor in colorectal neuroendocrine carcinoma
Journal Article
Depiction of the genomic and genetic landscape identifies CCL5 as a protective factor in colorectal neuroendocrine carcinoma
2021
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Overview
Background
Colorectal neuroendocrine carcinomas (CRNECs) are highly aggressive tumours with poor prognosis and low incidence. To date, the genomic landscape and molecular pathway alterations have not been elucidated.
Methods
Tissue sections and clinical information of CRNEC (
n
= 35) and CR neuroendocrine tumours (CRNETs) (
n
= 25) were collected as an in-house cohort (2010–2020). Comprehensive genomic and expression panels (AmoyDx® Master Panel) were applied to identify the genomic and genetic alterations of CRNEC. Through the depiction of the genomic landscape and transcriptome profile, we compared the difference between CRNEC and CRNET. Reverse transcription-polymerase chain reaction and immunofluorescence staining were performed to confirm the genetic alterations.
Results
High tumour mutation load was observed in CRNEC compared with CRNET. CRNECs showed a “cold” immune landscape and increased endothelial cell activity compared with NETs. Importantly, PAX5 was aberrantly expressed in CRNEC and predicted a poor prognosis of CRNECs. CCL5, a factor that is considered an immunosuppressive factor in several tumour types, was strongly expressed in CRNEC patients with long-term survival and correlated with high CD8
+
T cell infiltration.
Conclusion
Through the depiction of the genomic landscape and transcriptome profile, we demonstrated alterations in molecular pathways and potential targets for immunotherapy in CRNEC.
Publisher
Nature Publishing Group UK,Nature Publishing Group
Subject
/ Adult
/ Aged
/ Biomedical and Life Sciences
/ Carcinoma, Neuroendocrine - genetics
/ Carcinoma, Neuroendocrine - immunology
/ CD8-Positive T-Lymphocytes - immunology
/ Colorectal Neoplasms - genetics
/ Colorectal Neoplasms - immunology
/ Female
/ Gene Expression Profiling - methods
/ Gene Expression Regulation, Neoplastic
/ Genomics
/ Humans
/ Male
/ Mutation
/ Neuroendocrine Tumors - genetics
/ Neuroendocrine Tumors - immunology
/ Oncology
/ Tumors
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