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Oncogenic splicing abnormalities induced by DEAD‐Box Helicase 56 amplification in colorectal cancer
by
Tsuruda, Yusuke
, Noda, Miwa
, Ogawa, Yushi
, Eguchi, Hidetoshi
, Wakiyama, Hiroaki
, Kudo, Shin‐ei
, Fujii, Atsushi
, Tobo, Taro
, Kuroda, Yousuke
, Mimori, Koshi
, Yoshikawa, Yukihiro
, Ishida, Fumio
, Kouyama, Yuta
, Sato, Kuniaki
, Masuda, Takaaki
in
Aged
/ Alternative splicing
/ Animals
/ Antibodies
/ Bioinformatics
/ biomarker
/ Cancer
/ Cell Cycle
/ Cell Cycle Proteins - genetics
/ Cell growth
/ Cell Line, Tumor
/ Cell proliferation
/ Chromosomes, Human, Pair 7 - genetics
/ Colorectal cancer
/ Colorectal Neoplasms - genetics
/ Colorectal Neoplasms - metabolism
/ Colorectal Neoplasms - pathology
/ Datasets
/ DEAD-box RNA Helicases - genetics
/ DEAD-box RNA Helicases - metabolism
/ DEAD‐Box Helicase 56 (DDX56)
/ Deoxyribonucleic acid
/ DNA
/ DNA damage
/ DNA helicase
/ Female
/ Gene Amplification
/ Gene expression
/ Gene Expression Regulation, Neoplastic
/ Gene set enrichment analysis
/ Genomes
/ Grants
/ HCT116 Cells
/ Humans
/ Kinases
/ Male
/ Medical research
/ Metastases
/ Mice
/ Middle Aged
/ mRNA
/ Neoplasm Invasiveness
/ Neoplasm Staging
/ Neoplasm Transplantation
/ Nuclear Proteins - genetics
/ oncogene
/ Original
/ Polymerase chain reaction
/ Prognosis
/ Protein-Tyrosine Kinases - genetics
/ RNA Splicing
/ Sequence Analysis, RNA
/ splicing factor
/ Survival Analysis
/ Tumor suppressor genes
/ Tumorigenesis
/ Tumors
/ Up-Regulation
2019
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Oncogenic splicing abnormalities induced by DEAD‐Box Helicase 56 amplification in colorectal cancer
by
Tsuruda, Yusuke
, Noda, Miwa
, Ogawa, Yushi
, Eguchi, Hidetoshi
, Wakiyama, Hiroaki
, Kudo, Shin‐ei
, Fujii, Atsushi
, Tobo, Taro
, Kuroda, Yousuke
, Mimori, Koshi
, Yoshikawa, Yukihiro
, Ishida, Fumio
, Kouyama, Yuta
, Sato, Kuniaki
, Masuda, Takaaki
in
Aged
/ Alternative splicing
/ Animals
/ Antibodies
/ Bioinformatics
/ biomarker
/ Cancer
/ Cell Cycle
/ Cell Cycle Proteins - genetics
/ Cell growth
/ Cell Line, Tumor
/ Cell proliferation
/ Chromosomes, Human, Pair 7 - genetics
/ Colorectal cancer
/ Colorectal Neoplasms - genetics
/ Colorectal Neoplasms - metabolism
/ Colorectal Neoplasms - pathology
/ Datasets
/ DEAD-box RNA Helicases - genetics
/ DEAD-box RNA Helicases - metabolism
/ DEAD‐Box Helicase 56 (DDX56)
/ Deoxyribonucleic acid
/ DNA
/ DNA damage
/ DNA helicase
/ Female
/ Gene Amplification
/ Gene expression
/ Gene Expression Regulation, Neoplastic
/ Gene set enrichment analysis
/ Genomes
/ Grants
/ HCT116 Cells
/ Humans
/ Kinases
/ Male
/ Medical research
/ Metastases
/ Mice
/ Middle Aged
/ mRNA
/ Neoplasm Invasiveness
/ Neoplasm Staging
/ Neoplasm Transplantation
/ Nuclear Proteins - genetics
/ oncogene
/ Original
/ Polymerase chain reaction
/ Prognosis
/ Protein-Tyrosine Kinases - genetics
/ RNA Splicing
/ Sequence Analysis, RNA
/ splicing factor
/ Survival Analysis
/ Tumor suppressor genes
/ Tumorigenesis
/ Tumors
/ Up-Regulation
2019
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Oncogenic splicing abnormalities induced by DEAD‐Box Helicase 56 amplification in colorectal cancer
by
Tsuruda, Yusuke
, Noda, Miwa
, Ogawa, Yushi
, Eguchi, Hidetoshi
, Wakiyama, Hiroaki
, Kudo, Shin‐ei
, Fujii, Atsushi
, Tobo, Taro
, Kuroda, Yousuke
, Mimori, Koshi
, Yoshikawa, Yukihiro
, Ishida, Fumio
, Kouyama, Yuta
, Sato, Kuniaki
, Masuda, Takaaki
in
Aged
/ Alternative splicing
/ Animals
/ Antibodies
/ Bioinformatics
/ biomarker
/ Cancer
/ Cell Cycle
/ Cell Cycle Proteins - genetics
/ Cell growth
/ Cell Line, Tumor
/ Cell proliferation
/ Chromosomes, Human, Pair 7 - genetics
/ Colorectal cancer
/ Colorectal Neoplasms - genetics
/ Colorectal Neoplasms - metabolism
/ Colorectal Neoplasms - pathology
/ Datasets
/ DEAD-box RNA Helicases - genetics
/ DEAD-box RNA Helicases - metabolism
/ DEAD‐Box Helicase 56 (DDX56)
/ Deoxyribonucleic acid
/ DNA
/ DNA damage
/ DNA helicase
/ Female
/ Gene Amplification
/ Gene expression
/ Gene Expression Regulation, Neoplastic
/ Gene set enrichment analysis
/ Genomes
/ Grants
/ HCT116 Cells
/ Humans
/ Kinases
/ Male
/ Medical research
/ Metastases
/ Mice
/ Middle Aged
/ mRNA
/ Neoplasm Invasiveness
/ Neoplasm Staging
/ Neoplasm Transplantation
/ Nuclear Proteins - genetics
/ oncogene
/ Original
/ Polymerase chain reaction
/ Prognosis
/ Protein-Tyrosine Kinases - genetics
/ RNA Splicing
/ Sequence Analysis, RNA
/ splicing factor
/ Survival Analysis
/ Tumor suppressor genes
/ Tumorigenesis
/ Tumors
/ Up-Regulation
2019
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Oncogenic splicing abnormalities induced by DEAD‐Box Helicase 56 amplification in colorectal cancer
Journal Article
Oncogenic splicing abnormalities induced by DEAD‐Box Helicase 56 amplification in colorectal cancer
2019
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Overview
Alternative splicing, regulated by DEAD‐Box Helicase (DDX) families, plays an important role in cancer. However, the relationship between the DDX family and cancer has not been fully elucidated. In the present study, we identified a candidate oncogene DDX56 on Ch.7p by a bioinformatics approach using The Cancer Genome Atlas (TCGA) dataset of colorectal cancer (CRC). DDX56 expression was measured by RT‐qPCR and immunochemical staining in 108 CRC patients. Clinicopathological and survival analyses were carried out using three CRC datasets. Biological roles of DDX56 were explored by gene set enrichment analysis (GSEA), and cell proliferation in vitro and in vivo, cell cycle assays, and using DDX56‐knockdown or overexpressed CRC cells. RNA sequencing was carried out to elucidate the effect of DDX56 on mRNA splicing. We found that DDX56 expression was positively correlated with the amplification of DDX56 and was upregulated in CRC cells. High DDX56 expression was associated with lymphatic invasion and distant metastasis and was an independent poor prognostic factor. In vitro analysis, in vivo analysis and GSEA showed that DDX56 promoted proliferation ability through regulating the cell cycle. DDX56 knockdown reduced intron retention and tumor suppressor WEE1 expression, which functions as a G2‐M DNA damage checkpoint. We have identified DDX56 as a novel oncogene and prognostic biomarker of CRC that promotes alternative splicing of WEE1. We identified DDX56 as a novel oncogene on chromosome 7p and a prognostic biomarker of colorectal cancer (CRC). DDX56 can induce oncogenic splicing abnormalities of the G2‐M cell cycle checkpoint gene WEE1 which contributes to the inhibition of proliferation and cell cycle progression.
Publisher
John Wiley & Sons, Inc,John Wiley and Sons Inc
Subject
/ Animals
/ Cancer
/ Cell Cycle Proteins - genetics
/ Chromosomes, Human, Pair 7 - genetics
/ Colorectal Neoplasms - genetics
/ Colorectal Neoplasms - metabolism
/ Colorectal Neoplasms - pathology
/ Datasets
/ DEAD-box RNA Helicases - genetics
/ DEAD-box RNA Helicases - metabolism
/ DEAD‐Box Helicase 56 (DDX56)
/ DNA
/ Female
/ Gene Expression Regulation, Neoplastic
/ Gene set enrichment analysis
/ Genomes
/ Grants
/ Humans
/ Kinases
/ Male
/ Mice
/ mRNA
/ oncogene
/ Original
/ Protein-Tyrosine Kinases - genetics
/ Tumors
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