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DNA Methylation Signatures Predict Cytogenetic Subtype and Outcome in Pediatric Acute Myeloid Leukemia (AML)
by
Abrahamsson, Jonas
, Palmqvist, Lars
, Jahnukainen, Kirsi
, Bäcklin, Christofer L.
, Hovland, Randi
, Norén-Nyström, Ulrika
, Krali, Olga
, Larsson, Rolf
, Jónsson, Ólafur Gísli
, Hasle, Henrik
, Nordlund, Jessica
, Staffas, Anna
, Palle, Josefine
, Lausen, Birgitte
, Zeller, Bernward
in
450k array
/ Acute myeloid leukemia
/ Adolescent
/ Biomarkers, Tumor - genetics
/ cancer patient
/ cancer prognosis
/ cancer recurrence
/ Child
/ Child, Preschool
/ Classification
/ Clinical Medicine
/ Clinical outcomes
/ Clustering
/ controlled study
/ Core Binding Factor Alpha 2 Subunit - genetics
/ Cytogenetics
/ Datasets
/ Deoxyribonucleic acid
/ DNA
/ DNA Methylation
/ Epigenetics
/ Epigenome
/ Female
/ gene rearrangement
/ Genetic testing
/ Genomes
/ Histone-Lysine N-Methyltransferase - genetics
/ human
/ human cell
/ human tissue
/ Humans
/ Infant
/ karyotype
/ Karyotypes
/ karyotyping
/ Klinisk medicin
/ KMT2A gene
/ Leukemia
/ Leukemia, Myeloid, Acute - classification
/ Leukemia, Myeloid, Acute - genetics
/ Leukemia, Myeloid, Acute - pathology
/ Leukemogenesis
/ major clinical study
/ Male
/ Medical prognosis
/ mixed lineage leukemia protein
/ MLL gene
/ Myeloid leukemia
/ Myeloid-Lymphoid Leukemia Protein - genetics
/ Oncogene Proteins, Fusion - genetics
/ Pediatric AML
/ Pediatrics
/ protein CBFA2T1
/ relapse
/ risk
/ RUNX1 gene
/ Runx1 protein
/ RUNX1 Translocation Partner 1 Protein - genetics
/ RUNX1T1 gene
/ Subtyping
/ Survival analysis
/ transcription factor RUNX1
/ tumor-related gene
2021
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DNA Methylation Signatures Predict Cytogenetic Subtype and Outcome in Pediatric Acute Myeloid Leukemia (AML)
by
Abrahamsson, Jonas
, Palmqvist, Lars
, Jahnukainen, Kirsi
, Bäcklin, Christofer L.
, Hovland, Randi
, Norén-Nyström, Ulrika
, Krali, Olga
, Larsson, Rolf
, Jónsson, Ólafur Gísli
, Hasle, Henrik
, Nordlund, Jessica
, Staffas, Anna
, Palle, Josefine
, Lausen, Birgitte
, Zeller, Bernward
in
450k array
/ Acute myeloid leukemia
/ Adolescent
/ Biomarkers, Tumor - genetics
/ cancer patient
/ cancer prognosis
/ cancer recurrence
/ Child
/ Child, Preschool
/ Classification
/ Clinical Medicine
/ Clinical outcomes
/ Clustering
/ controlled study
/ Core Binding Factor Alpha 2 Subunit - genetics
/ Cytogenetics
/ Datasets
/ Deoxyribonucleic acid
/ DNA
/ DNA Methylation
/ Epigenetics
/ Epigenome
/ Female
/ gene rearrangement
/ Genetic testing
/ Genomes
/ Histone-Lysine N-Methyltransferase - genetics
/ human
/ human cell
/ human tissue
/ Humans
/ Infant
/ karyotype
/ Karyotypes
/ karyotyping
/ Klinisk medicin
/ KMT2A gene
/ Leukemia
/ Leukemia, Myeloid, Acute - classification
/ Leukemia, Myeloid, Acute - genetics
/ Leukemia, Myeloid, Acute - pathology
/ Leukemogenesis
/ major clinical study
/ Male
/ Medical prognosis
/ mixed lineage leukemia protein
/ MLL gene
/ Myeloid leukemia
/ Myeloid-Lymphoid Leukemia Protein - genetics
/ Oncogene Proteins, Fusion - genetics
/ Pediatric AML
/ Pediatrics
/ protein CBFA2T1
/ relapse
/ risk
/ RUNX1 gene
/ Runx1 protein
/ RUNX1 Translocation Partner 1 Protein - genetics
/ RUNX1T1 gene
/ Subtyping
/ Survival analysis
/ transcription factor RUNX1
/ tumor-related gene
2021
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DNA Methylation Signatures Predict Cytogenetic Subtype and Outcome in Pediatric Acute Myeloid Leukemia (AML)
by
Abrahamsson, Jonas
, Palmqvist, Lars
, Jahnukainen, Kirsi
, Bäcklin, Christofer L.
, Hovland, Randi
, Norén-Nyström, Ulrika
, Krali, Olga
, Larsson, Rolf
, Jónsson, Ólafur Gísli
, Hasle, Henrik
, Nordlund, Jessica
, Staffas, Anna
, Palle, Josefine
, Lausen, Birgitte
, Zeller, Bernward
in
450k array
/ Acute myeloid leukemia
/ Adolescent
/ Biomarkers, Tumor - genetics
/ cancer patient
/ cancer prognosis
/ cancer recurrence
/ Child
/ Child, Preschool
/ Classification
/ Clinical Medicine
/ Clinical outcomes
/ Clustering
/ controlled study
/ Core Binding Factor Alpha 2 Subunit - genetics
/ Cytogenetics
/ Datasets
/ Deoxyribonucleic acid
/ DNA
/ DNA Methylation
/ Epigenetics
/ Epigenome
/ Female
/ gene rearrangement
/ Genetic testing
/ Genomes
/ Histone-Lysine N-Methyltransferase - genetics
/ human
/ human cell
/ human tissue
/ Humans
/ Infant
/ karyotype
/ Karyotypes
/ karyotyping
/ Klinisk medicin
/ KMT2A gene
/ Leukemia
/ Leukemia, Myeloid, Acute - classification
/ Leukemia, Myeloid, Acute - genetics
/ Leukemia, Myeloid, Acute - pathology
/ Leukemogenesis
/ major clinical study
/ Male
/ Medical prognosis
/ mixed lineage leukemia protein
/ MLL gene
/ Myeloid leukemia
/ Myeloid-Lymphoid Leukemia Protein - genetics
/ Oncogene Proteins, Fusion - genetics
/ Pediatric AML
/ Pediatrics
/ protein CBFA2T1
/ relapse
/ risk
/ RUNX1 gene
/ Runx1 protein
/ RUNX1 Translocation Partner 1 Protein - genetics
/ RUNX1T1 gene
/ Subtyping
/ Survival analysis
/ transcription factor RUNX1
/ tumor-related gene
2021
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DNA Methylation Signatures Predict Cytogenetic Subtype and Outcome in Pediatric Acute Myeloid Leukemia (AML)
Journal Article
DNA Methylation Signatures Predict Cytogenetic Subtype and Outcome in Pediatric Acute Myeloid Leukemia (AML)
2021
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Overview
Pediatric acute myeloid leukemia (AML) is a heterogeneous disease composed of clinically relevant subtypes defined by recurrent cytogenetic aberrations. The majority of the aberrations used in risk grouping for treatment decisions are extensively studied, but still a large proportion of pediatric AML patients remain cytogenetically undefined and would therefore benefit from additional molecular investigation. As aberrant epigenetic regulation has been widely observed during leukemogenesis, we hypothesized that DNA methylation signatures could be used to predict molecular subtypes and identify signatures with prognostic impact in AML. To study genome-wide DNA methylation, we analyzed 123 diagnostic and 19 relapse AML samples on Illumina 450k DNA methylation arrays. We designed and validated DNA methylation-based classifiers for AML cytogenetic subtype, resulting in an overall test accuracy of 91%. Furthermore, we identified methylation signatures associated with outcome in t(8;21)/RUNX1-RUNX1T1, normal karyotype, and MLL/KMT2A-rearranged subgroups (p < 0.01). Overall, these results further underscore the clinical value of DNA methylation analysis in AML.
Publisher
MDPI AG,MDPI
Subject
/ Biomarkers, Tumor - genetics
/ Child
/ Core Binding Factor Alpha 2 Subunit - genetics
/ Datasets
/ DNA
/ Female
/ Genomes
/ Histone-Lysine N-Methyltransferase - genetics
/ human
/ Humans
/ Infant
/ Leukemia
/ Leukemia, Myeloid, Acute - classification
/ Leukemia, Myeloid, Acute - genetics
/ Leukemia, Myeloid, Acute - pathology
/ Male
/ mixed lineage leukemia protein
/ MLL gene
/ Myeloid-Lymphoid Leukemia Protein - genetics
/ Oncogene Proteins, Fusion - genetics
/ relapse
/ risk
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