Journal Article

Genetic structure of coast redwood (Sequoia sempervirens D. Don Endl.) populations in and outside of the natural distribution range based on nuclear and chloroplast microsatellite markers

Breidenbach, Natalie, Gailing, Oliver, Krutovsky, Konstantin V.

2020

Overview

Coast redwood ( Sequoia sempervirens ) naturally growing in southern Oregon and northern California is one of the few conifer tree species that are polyploid. Despite its unique ecological and economic importance, its population genetic structure is still insufficiently studied. To obtain additional data on its population genetic structure we genotyped 317 samples collected from populations in California (data set C) and 144 trees growing in a provenance trial in France (data set F) using 12 nuclear (five random nuclear genomic nSSRs and seven expressed sequence tag EST-SSRs) and six chloroplast (cpSSRs) microsatellite or simple sequence repeat (SSR) markers, respectively. These data sets were also used as reference to infer the origin of 147 coast redwood trees growing in Germany (data set G). Coast redwood was introduced to Europe, including Germany as an ornamental species, decades ago. Due to its fast growth and high timber quality, it could be considered as a potential commercial timber species, especially in perspective to climate warming that makes more regions in Germany suitable for its growing. The well performing trees in colder Germany could be potential frost resistant genotypes, but their genetic properties and origin are mostly unknown. Within the natural range in southern Oregon and northern California, only two relatively weak clusters were identified, one northern and one southern, separated by the San Francisco Bay. High genetic diversity, but low differentiation was found based on the 12 nuclear SSR markers for all three data sets F, C and G. We found that investigated 147 German trees represented only 37 different genotypes. They showed genetic diversity at the level less than diversity observed within the natural range in the northern or southern cluster, but more similar to the diversity observed in the southern cluster. It was difficult to assign German trees to the original single native populations using the six cpSSR markers, but rather to either the northern or southern cluster. The high number of haplotypes found in the data sets based on six cpSSR markers and low genetic differentiation based on 12 nuclear SSRs found in this study helps us study and better understand population genetic structure of this complex polyploid tree and supports the selection of potential genotypes for German forestry.

• Publisher: Public Library of Science,Public Library of Science (PLoS)
• Subject: Biology and Life Sciences / California / Chloroplasts / Chloroplasts - genetics / Climate / Climate change / Clusters / Commercial species / Computer and Information Sciences / Coniferous trees / Datasets / Demography - methods / Differentiation / Distribution / Economic importance / Ecosystem / Environmental aspects / Expressed Sequence Tags / Forestry / Frost resistance / Genetic aspects / Genetic diversity / Genetic markers / Genetic structure / Genetic Variation - genetics / Genetics, Population - methods / Genotypes / Germany / Global warming / Haplotypes / Laboratories / Markers / Microsatellite Repeats - genetics / Microsatellites / Oregon / People and Places / Phylogeny / Plant species / Polyploidy / Population / Population genetics / Population studies / Populations / Precipitation / Provenance / Redwood / Research and Analysis Methods / Sequoia (Redwood) / Sequoia - genetics / Sequoia sempervirens / Timber / Trees / Trees - genetics / Watersheds / Wood