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Lifelong single-cell profiling of cranial neural crest diversification in zebrafish
by
Smeeton, Joanna
, Thiruppathy, Mathi
, Crump, J. Gage
, Arata, Claire
, Fabian, Peter
, Chen, Hung-Jhen
, Nelson, Nellie
, Tseng, Kuo-Chang
in
14/32
/ 45
/ 45/23
/ 45/91
/ 631/114/2114
/ 631/136/142
/ 631/136/2442
/ 631/1647/514/1949
/ 631/532/2063
/ 64/116
/ Accessibility
/ Animals
/ Cartilage
/ Cell Differentiation - physiology
/ Cell fate
/ Chromatin
/ Chromatin remodeling
/ Circuits
/ Danio rerio
/ Datasets
/ Diversification
/ Enhancers
/ Fibroblasts
/ GATA-3 protein
/ Gene expression
/ Gene Expression Regulation, Developmental
/ Genomics
/ Humanities and Social Sciences
/ Medicine
/ multidisciplinary
/ Neural crest
/ Neural Crest - cytology
/ Neural Crest - metabolism
/ Neural stem cells
/ Priming
/ Progenitor cells
/ Respiration
/ Science
/ Science (multidisciplinary)
/ Single-Cell Analysis - methods
/ Skull
/ Skull - cytology
/ Stem cells
/ Stromal cells
/ Transcription factors
/ Transcriptome
/ Transcriptomes
/ Vertebrates
/ Zebrafish
/ Zebrafish - embryology
/ Zebrafish - metabolism
2022
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Lifelong single-cell profiling of cranial neural crest diversification in zebrafish
by
Smeeton, Joanna
, Thiruppathy, Mathi
, Crump, J. Gage
, Arata, Claire
, Fabian, Peter
, Chen, Hung-Jhen
, Nelson, Nellie
, Tseng, Kuo-Chang
in
14/32
/ 45
/ 45/23
/ 45/91
/ 631/114/2114
/ 631/136/142
/ 631/136/2442
/ 631/1647/514/1949
/ 631/532/2063
/ 64/116
/ Accessibility
/ Animals
/ Cartilage
/ Cell Differentiation - physiology
/ Cell fate
/ Chromatin
/ Chromatin remodeling
/ Circuits
/ Danio rerio
/ Datasets
/ Diversification
/ Enhancers
/ Fibroblasts
/ GATA-3 protein
/ Gene expression
/ Gene Expression Regulation, Developmental
/ Genomics
/ Humanities and Social Sciences
/ Medicine
/ multidisciplinary
/ Neural crest
/ Neural Crest - cytology
/ Neural Crest - metabolism
/ Neural stem cells
/ Priming
/ Progenitor cells
/ Respiration
/ Science
/ Science (multidisciplinary)
/ Single-Cell Analysis - methods
/ Skull
/ Skull - cytology
/ Stem cells
/ Stromal cells
/ Transcription factors
/ Transcriptome
/ Transcriptomes
/ Vertebrates
/ Zebrafish
/ Zebrafish - embryology
/ Zebrafish - metabolism
2022
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Lifelong single-cell profiling of cranial neural crest diversification in zebrafish
by
Smeeton, Joanna
, Thiruppathy, Mathi
, Crump, J. Gage
, Arata, Claire
, Fabian, Peter
, Chen, Hung-Jhen
, Nelson, Nellie
, Tseng, Kuo-Chang
in
14/32
/ 45
/ 45/23
/ 45/91
/ 631/114/2114
/ 631/136/142
/ 631/136/2442
/ 631/1647/514/1949
/ 631/532/2063
/ 64/116
/ Accessibility
/ Animals
/ Cartilage
/ Cell Differentiation - physiology
/ Cell fate
/ Chromatin
/ Chromatin remodeling
/ Circuits
/ Danio rerio
/ Datasets
/ Diversification
/ Enhancers
/ Fibroblasts
/ GATA-3 protein
/ Gene expression
/ Gene Expression Regulation, Developmental
/ Genomics
/ Humanities and Social Sciences
/ Medicine
/ multidisciplinary
/ Neural crest
/ Neural Crest - cytology
/ Neural Crest - metabolism
/ Neural stem cells
/ Priming
/ Progenitor cells
/ Respiration
/ Science
/ Science (multidisciplinary)
/ Single-Cell Analysis - methods
/ Skull
/ Skull - cytology
/ Stem cells
/ Stromal cells
/ Transcription factors
/ Transcriptome
/ Transcriptomes
/ Vertebrates
/ Zebrafish
/ Zebrafish - embryology
/ Zebrafish - metabolism
2022
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Lifelong single-cell profiling of cranial neural crest diversification in zebrafish
Journal Article
Lifelong single-cell profiling of cranial neural crest diversification in zebrafish
2022
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Overview
The cranial neural crest generates a huge diversity of derivatives, including the bulk of connective and skeletal tissues of the vertebrate head. How neural crest cells acquire such extraordinary lineage potential remains unresolved. By integrating single-cell transcriptome and chromatin accessibility profiles of cranial neural crest-derived cells across the zebrafish lifetime, we observe progressive and region-specific establishment of enhancer accessibility for distinct fates. Neural crest-derived cells rapidly diversify into specialized progenitors, including multipotent skeletal progenitors, stromal cells with a regenerative signature, fibroblasts with a unique metabolic signature linked to skeletal integrity, and gill-specific progenitors generating cell types for respiration. By retrogradely mapping the emergence of lineage-specific chromatin accessibility, we identify a wealth of candidate lineage-priming factors, including a Gata3 regulatory circuit for respiratory cell fates. Rather than multilineage potential being established during cranial neural crest specification, our findings support progressive and region-specific chromatin remodeling underlying acquisition of diverse potential.
Cranial neural crest generates a wide diversity of cell types. Here the authors perform single-cell profiling of neural crest to identify key enhancers and transcription factors for cell fate competency, thus revealing progressive acquisition of fate potential.
Publisher
Nature Publishing Group UK,Nature Publishing Group,Nature Portfolio
Subject
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