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Comparative Pan-Genome Analysis of Oral Veillonella Species
by
Kiyoura, Yusuke
, Haase, Elaine M.
, Mashima, Izumi
, Lin, Chieh-Hua
, Scannapieco, Frank A.
, Liao, Yu-Chieh
, Nakazawa, Futoshi
in
biochemical pathways
/ BPGA
/ Carbohydrates
/ computer simulation
/ Dental caries
/ energy
/ Energy sources
/ Fitness equipment
/ fructose
/ Genes
/ Genomes
/ humans
/ KEGG
/ lactate metabolism
/ Lactic acid
/ Metabolic networks
/ Metabolic pathways
/ Metabolism
/ metabolome
/ microbiome
/ Microbiomes
/ oral Veillonella
/ pan-genome analysis
/ Species
2021
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Comparative Pan-Genome Analysis of Oral Veillonella Species
by
Kiyoura, Yusuke
, Haase, Elaine M.
, Mashima, Izumi
, Lin, Chieh-Hua
, Scannapieco, Frank A.
, Liao, Yu-Chieh
, Nakazawa, Futoshi
in
biochemical pathways
/ BPGA
/ Carbohydrates
/ computer simulation
/ Dental caries
/ energy
/ Energy sources
/ Fitness equipment
/ fructose
/ Genes
/ Genomes
/ humans
/ KEGG
/ lactate metabolism
/ Lactic acid
/ Metabolic networks
/ Metabolic pathways
/ Metabolism
/ metabolome
/ microbiome
/ Microbiomes
/ oral Veillonella
/ pan-genome analysis
/ Species
2021
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Comparative Pan-Genome Analysis of Oral Veillonella Species
by
Kiyoura, Yusuke
, Haase, Elaine M.
, Mashima, Izumi
, Lin, Chieh-Hua
, Scannapieco, Frank A.
, Liao, Yu-Chieh
, Nakazawa, Futoshi
in
biochemical pathways
/ BPGA
/ Carbohydrates
/ computer simulation
/ Dental caries
/ energy
/ Energy sources
/ Fitness equipment
/ fructose
/ Genes
/ Genomes
/ humans
/ KEGG
/ lactate metabolism
/ Lactic acid
/ Metabolic networks
/ Metabolic pathways
/ Metabolism
/ metabolome
/ microbiome
/ Microbiomes
/ oral Veillonella
/ pan-genome analysis
/ Species
2021
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Comparative Pan-Genome Analysis of Oral Veillonella Species
Journal Article
Comparative Pan-Genome Analysis of Oral Veillonella Species
2021
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Overview
The genus Veillonella is a common and abundant member of the oral microbiome. It includes eight species, V. atypica, V. denticariosi, V. dispar, V. infantium, V. nakazawae, V. parvula, V. rogosae and V. tobetusensis. They possess important metabolic pathways that utilize lactate as an energy source. However, the overall metabolome of these species has not been studied. To further understand the metabolic framework of Veillonella in the human oral microbiome, we conducted a comparative pan-genome analysis of the eight species of oral Veillonella. Analysis of the oral Veillonella pan-genome revealed features based on KEGG pathway information to adapt to the oral environment. We found that the fructose metabolic pathway was conserved in all oral Veillonella species, and oral Veillonella have conserved pathways that utilize carbohydrates other than lactate as an energy source. This discovery may help to better understand the metabolic network among oral microbiomes and will provide guidance for the design of future in silico and in vitro studies.
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