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Smarcad1 mediates microbiota-induced inflammation in mouse and coordinates gene expression in the intestinal epithelium
by
Miller, J. Ross
, Mattiuz, Raphaël
, Liebert, Anke
, Jain, Payal
, Okkenhaug, Hanneke
, Kazakevych, Juri
, Corrêa, Renan Oliveira
, Veldhoen, Marc
, Varga-Weisz, Patrick
, Denizot, Jérémy
, Fraser, Claire
, Vinolo, Marco Aurélio Ramirez
, Stellato, Claudia
, Portovedo, Mariana
, Mosavie, Mia
, Célestine, Marina
in
Animal Genetics and Genomics
/ Animals
/ Bioinformatics
/ Biomedical and Life Sciences
/ Biotechnology
/ Cellular Biology
/ chromatin
/ colitis
/ Colitis - genetics
/ Colitis - microbiology
/ DNA Helicases - genetics
/ DNA Helicases - metabolism
/ DNA Helicases - physiology
/ Epithelium
/ Evolutionary Biology
/ Gene Deletion
/ Gene expression
/ Gene Expression Regulation
/ Genetics
/ genome
/ histones
/ Histones - metabolism
/ Human Genetics
/ inflammation
/ innate immunity
/ Intestinal microflora
/ intestinal microorganisms
/ intestinal mucosa
/ Intestinal Mucosa - metabolism
/ Intestine
/ Life Sciences
/ Mice
/ Microbial Genetics and Genomics
/ Microbiome Biology
/ Microbiomes
/ Microbiota
/ Plant Genetics and Genomics
/ probiotics
/ Regulatory Elements, Transcriptional
2020
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Smarcad1 mediates microbiota-induced inflammation in mouse and coordinates gene expression in the intestinal epithelium
by
Miller, J. Ross
, Mattiuz, Raphaël
, Liebert, Anke
, Jain, Payal
, Okkenhaug, Hanneke
, Kazakevych, Juri
, Corrêa, Renan Oliveira
, Veldhoen, Marc
, Varga-Weisz, Patrick
, Denizot, Jérémy
, Fraser, Claire
, Vinolo, Marco Aurélio Ramirez
, Stellato, Claudia
, Portovedo, Mariana
, Mosavie, Mia
, Célestine, Marina
in
Animal Genetics and Genomics
/ Animals
/ Bioinformatics
/ Biomedical and Life Sciences
/ Biotechnology
/ Cellular Biology
/ chromatin
/ colitis
/ Colitis - genetics
/ Colitis - microbiology
/ DNA Helicases - genetics
/ DNA Helicases - metabolism
/ DNA Helicases - physiology
/ Epithelium
/ Evolutionary Biology
/ Gene Deletion
/ Gene expression
/ Gene Expression Regulation
/ Genetics
/ genome
/ histones
/ Histones - metabolism
/ Human Genetics
/ inflammation
/ innate immunity
/ Intestinal microflora
/ intestinal microorganisms
/ intestinal mucosa
/ Intestinal Mucosa - metabolism
/ Intestine
/ Life Sciences
/ Mice
/ Microbial Genetics and Genomics
/ Microbiome Biology
/ Microbiomes
/ Microbiota
/ Plant Genetics and Genomics
/ probiotics
/ Regulatory Elements, Transcriptional
2020
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Smarcad1 mediates microbiota-induced inflammation in mouse and coordinates gene expression in the intestinal epithelium
by
Miller, J. Ross
, Mattiuz, Raphaël
, Liebert, Anke
, Jain, Payal
, Okkenhaug, Hanneke
, Kazakevych, Juri
, Corrêa, Renan Oliveira
, Veldhoen, Marc
, Varga-Weisz, Patrick
, Denizot, Jérémy
, Fraser, Claire
, Vinolo, Marco Aurélio Ramirez
, Stellato, Claudia
, Portovedo, Mariana
, Mosavie, Mia
, Célestine, Marina
in
Animal Genetics and Genomics
/ Animals
/ Bioinformatics
/ Biomedical and Life Sciences
/ Biotechnology
/ Cellular Biology
/ chromatin
/ colitis
/ Colitis - genetics
/ Colitis - microbiology
/ DNA Helicases - genetics
/ DNA Helicases - metabolism
/ DNA Helicases - physiology
/ Epithelium
/ Evolutionary Biology
/ Gene Deletion
/ Gene expression
/ Gene Expression Regulation
/ Genetics
/ genome
/ histones
/ Histones - metabolism
/ Human Genetics
/ inflammation
/ innate immunity
/ Intestinal microflora
/ intestinal microorganisms
/ intestinal mucosa
/ Intestinal Mucosa - metabolism
/ Intestine
/ Life Sciences
/ Mice
/ Microbial Genetics and Genomics
/ Microbiome Biology
/ Microbiomes
/ Microbiota
/ Plant Genetics and Genomics
/ probiotics
/ Regulatory Elements, Transcriptional
2020
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Smarcad1 mediates microbiota-induced inflammation in mouse and coordinates gene expression in the intestinal epithelium
Journal Article
Smarcad1 mediates microbiota-induced inflammation in mouse and coordinates gene expression in the intestinal epithelium
2020
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Overview
Background
How intestinal epithelial cells interact with the microbiota and how this is regulated at the gene expression level are critical questions. Smarcad1 is a conserved chromatin remodeling factor with a poorly understood tissue function. As this factor is highly expressed in the stem and proliferative zones of the intestinal epithelium, we explore its role in this tissue.
Results
Specific deletion of
Smarcad1
in the mouse intestinal epithelium leads to colitis resistance and substantial changes in gene expression, including a striking increase of expression of several genes linked to innate immunity. Absence of Smarcad1 leads to changes in chromatin accessibility and significant changes in histone H3K9me3 over many sites, including genes that are differentially regulated upon
Smarcad1
deletion. We identify candidate members of the gut microbiome that elicit a Smarcad1-dependent colitis response, including members of the poorly understood TM7 phylum.
Conclusions
Our study sheds light onto the role of the chromatin remodeling machinery in intestinal epithelial cells in the colitis response and shows how a highly conserved chromatin remodeling factor has a distinct role in anti-microbial defense. This work highlights the importance of the intestinal epithelium in the colitis response and the potential of microbial species as pharmacological and probiotic targets in the context of inflammatory diseases.
Publisher
BioMed Central,Springer Nature B.V,BMC
Subject
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