Journal Article

Integrative structure and functional anatomy of a nuclear pore complex

Greenberg, Charles H., Shi, Yi, Unruh, Jay R., Rout, Michael P., Chait, Brian T., Upla, Paula, Jacobs, Erica Y., Chaudhury, Azraa S., Hogan, Joanna A., Pellarin, Riccardo, Herricks, Thurston, Fernandez-Martinez, Javier, Williams, Rosemary, Echeverria, Ignacia, Slaughter, Brian D., Wang, Junjie, Raveh, Barak, Aitchison, John D., Mironska, Roxana, Shivaraju, Manjunatha, Nudelman, Ilona, Zhang, Wenzhu, de la Cruz, M. Jason, Ludtke, Steven J., Stokes, David L., Sali, Andrej, Kim, Seung Joong, Jarrold, Martin F., Chemmama, Ilan E., Yu, Zhiheng, Gerton, Jennifer L., Akey, Christopher W.

2018

Overview

Nuclear pore complexes play central roles as gatekeepers of RNA and protein transport between the cytoplasm and nucleoplasm. However, their large size and dynamic nature have impeded a full structural and functional elucidation. Here we determined the structure of the entire 552-protein nuclear pore complex of the yeast Saccharomyces cerevisiae at sub-nanometre precision by satisfying a wide range of data relating to the molecular arrangement of its constituents. The nuclear pore complex incorporates sturdy diagonal columns and connector cables attached to these columns, imbuing the structure with strength and flexibility. These cables also tie together all other elements of the nuclear pore complex, including membrane-interacting regions, outer rings and RNA-processing platforms. Inwardly directed anchors create a high density of transport factor-docking Phe-Gly repeats in the central channel, organized into distinct functional units. This integrative structure enables us to rationalize the architecture, transport mechanism and evolutionary origins of the nuclear pore complex. The structure of the yeast nuclear pore complex, determined at sub-nanometre precision using an integrative approach that combines a wide range of data, reveals details of its architecture, transport mechanism and evolutionary origins. Structure of yeast nuclear pore complex Nuclear pore complexes (NPCs) are the gateways for the transport of RNA and proteins into and out of the nucleus. Although previous work has provided structural insights into parts of NPCs, getting a full picture of these complexes has proved difficult owing to their large size and dynamic nature. A multidisciplinary team of researchers now report the structure of the entire 552-protein NPC of the yeast at a sub-nanometre level using an integrative approach including mass spectrometry, cryo-electron tomography and chemical crosslinking. The structure provides a detailed view of the functional elements of the NPC and clarifies its architecture, mechanism of action and evolutionary origins.

• Publisher: Nature Publishing Group UK,Nature Publishing Group
• Subject: 101/28 / 101/58 / 101/6 / 631/114/2401 / 631/1647/2258/1267 / 631/535 / 631/80/389/2029 / 631/80/389/2333 / Architecture / Baking yeast / Biochemistry, Molecular Biology / Biophysics / Cables / Cell anatomy / Columns (structural) / Cross-Linking Reagents - chemistry / Cytoplasm / Docking / Functional anatomy / Humanities and Social Sciences / Life Sciences / Mass Spectrometry / Microscopy / Models, Molecular / Molecular biology / Morphology / multidisciplinary / Nuclear Pore - chemistry / Nuclear Pore - metabolism / Nuclear Pore Complex Proteins - chemistry / Nuclear Pore Complex Proteins - metabolism / Peptides / Physiological aspects / Protein research / Protein Stability / Protein Transport / Proteins / Ribonucleic acid / RNA / RNA processing / RNA Transport / Saccharomyces cerevisiae / Saccharomyces cerevisiae - chemistry / Science / Structure / Structure-function relationships / Task forces / Yeast