Journal Article

Deep Sequencing Reveals Novel Genetic Variants in Children with Acute Liver Failure and Tissue Evidence of Impaired Energy Metabolism

Moran, Molly C., Huang, Taosheng, Miethke, Alexander G., Husami, Ammar, Witte, David, Wang, Xinjian, Bove, Kevin E., Peters, Anna, Simmons, Julia R., Valencia, C. Alexander, Qian, Yaping, Wang, Jin, Mathur, Abhinav, Sheridan, Rachel

2016

Overview

The etiology of acute liver failure (ALF) remains elusive in almost half of affected children. We hypothesized that inherited mitochondrial and fatty acid oxidation disorders were occult etiological factors in patients with idiopathic ALF and impaired energy metabolism. Twelve patients with elevated blood molar lactate/pyruvate ratio and indeterminate etiology were selected from a retrospective cohort of 74 subjects with ALF because their fixed and frozen liver samples were available for histological, ultrastructural, molecular and biochemical analysis. A customized next-generation sequencing panel for 26 genes associated with mitochondrial and fatty acid oxidation defects revealed mutations and sequence variants in five subjects. Variants involved the genes ACAD9, POLG, POLG2, DGUOK, and RRM2B; the latter not previously reported in subjects with ALF. The explanted livers of the patients with heterozygous, truncating insertion mutations in RRM2B showed patchy micro- and macrovesicular steatosis, decreased mitochondrial DNA (mtDNA) content <30% of controls, and reduced respiratory chain complex activity; both patients had good post-transplant outcome. One infant with severe lactic acidosis was found to carry two heterozygous variants in ACAD9, which was associated with isolated complex I deficiency and diffuse hypergranular hepatocytes. The two subjects with heterozygous variants of unknown clinical significance in POLG and DGUOK developed ALF following drug exposure. Their hepatocytes displayed abnormal mitochondria by electron microscopy. Targeted next generation sequencing and correlation with histological, ultrastructural and functional studies on liver tissue in children with elevated lactate/pyruvate ratio expand the spectrum of genes associated with pediatric ALF.

• Publisher: Public Library of Science,Public Library of Science (PLoS)
• Subject: Acidosis / Adolescent / Biochemical analysis / Biology and Life Sciences / Care and treatment / Child / Child, Preschool / Children / Dehydrogenases / Deoxyribonucleic acid / Disease / DNA / DNA, Mitochondrial - genetics / Electron microscopy / Electron transport / Energy Metabolism / Etiology / Fatty acids / Female / Gastroenterology / Gene sequencing / Genes / Genetic diversity / Genetic variance / Genetic Variation / Genetics / Hepatocytes / Hepatology / High-Throughput Nucleotide Sequencing / Hospitals / Humans / Infant / Infant, Newborn / Insertion / Lactic acid / Lactic acidosis / Liver / Liver - metabolism / Liver - pathology / Liver diseases / Liver failure / Liver Failure, Acute - genetics / Liver Failure, Acute - metabolism / Liver Failure, Acute - pathology / Male / Medicine and Health Sciences / Metabolism / Metabolites / Mitochondria / Mitochondria - genetics / Mitochondria - metabolism / Mitochondria - pathology / Mitochondrial diseases / Mitochondrial DNA / Mutation / Nitric oxide / Nutrition / Oxidation / Pathology / Patient outcomes / Patients / Pediatrics / Phosphorylation / Pyruvic acid / Research and analysis methods / Retrospective Studies / Ribonucleotide reductase / Risk factors / Steatosis