Journal Article

Improved supervised classification of accelerometry data to distinguish behaviors of soaring birds

Suffredini, Tony, Lanzone, Michael, Sridhar, Srisarguru, Katzner, Todd, Wessells, Stephen M., Sur, Maitreyi, Bloom, Peter H., Blackshire, Sheldon

2017

Overview

Soaring birds can balance the energetic costs of movement by switching between flapping, soaring and gliding flight. Accelerometers can allow quantification of flight behavior and thus a context to interpret these energetic costs. However, models to interpret accelerometry data are still being developed, rarely trained with supervised datasets, and difficult to apply. We collected accelerometry data at 140Hz from a trained golden eagle (Aquila chrysaetos) whose flight we recorded with video that we used to characterize behavior. We applied two forms of supervised classifications, random forest (RF) models and K-nearest neighbor (KNN) models. The KNN model was substantially easier to implement than the RF approach but both were highly accurate in classifying basic behaviors such as flapping (85.5% and 83.6% accurate, respectively), soaring (92.8% and 87.6%) and sitting (84.1% and 88.9%) with overall accuracies of 86.6% and 92.3% respectively. More detailed classification schemes, with specific behaviors such as banking and straight flights were well classified only by the KNN model (91.24% accurate; RF = 61.64% accurate). The RF model maintained its accuracy of classifying basic behavior classification accuracy of basic behaviors at sampling frequencies as low as 10Hz, the KNN at sampling frequencies as low as 20Hz. Classification of accelerometer data collected from free ranging birds demonstrated a strong dependence of predicted behavior on the type of classification model used. Our analyses demonstrate the consequence of different approaches to classification of accelerometry data, the potential to optimize classification algorithms with validated flight behaviors to improve classification accuracy, ideal sampling frequencies for different classification algorithms, and a number of ways to improve commonly used analytical techniques and best practices for classification of accelerometry data.

• Publisher: Public Library of Science,Public Library of Science (PLoS)
• Subject: Accelerometers / Accelerometry / Accuracy / Algorithms / Analysis / Animal behavior / Animals / Banking / Behavior, Animal / Best practice / Biology and Life Sciences / Birds / Chelonia mydas / Classification / Computer and Information Sciences / Data collection / Eagles / Ecosystems / Engineering and Technology / Flapping / Flight / Flight behavior / Flight, Animal / Gliding / Golden eagle / Machine Learning / Medicine and Health Sciences / Metabolism / Models, Biological / Models, Statistical / Sampling / Soaring / Studies / Switching / Telemetry