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Integrated analysis of the transcriptome and metabolome of purple and green leaves of Tetrastigma hemsleyanum reveals gene expression patterns involved in anthocyanin biosynthesis

by Zhu, Weidong , Lu, Qiujun , Wu, Qifeng , Qian, Lihua , Yan, Jianli , Huang, Yuqing , Wang, Xianbo , Qiu, Jieren , Ruan, Songlin

in Acids / Agriculture / Analysis / Anthocyanins / Anthocyanins - genetics / Anthocyanins - metabolism / Biology and Life Sciences / Biosynthesis / Biotechnology / Color / Computational Biology / Computer and Information Sciences / Correlation / Correlation coefficient / Correlation coefficients / Cultivars / Data analysis / Flavonoids / Gene expression / Gene Expression Profiling / Gene Expression Regulation, Plant / Gene sequencing / Genes / Genes, Plant / Information management / Laboratories / Metabolism / Metabolites / Metabolome - genetics / Molecular biology / Novels / Physiological aspects / Plant Leaves - metabolism / Plant Proteins - genetics / Proteomics / Ribonucleic acid / RNA / Tandem Mass Spectrometry / Tetrastigma / Transcription / Transcriptome - genetics / Vitaceae - chemistry / Vitaceae - genetics / Vitaceae - metabolism

2020

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Integrated analysis of the transcriptome and metabolome of purple and green leaves of Tetrastigma hemsleyanum reveals gene expression patterns involved in anthocyanin biosynthesis

by Zhu, Weidong , Lu, Qiujun , Wu, Qifeng , Qian, Lihua , Yan, Jianli , Huang, Yuqing , Wang, Xianbo , Qiu, Jieren , Ruan, Songlin

2020

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Integrated analysis of the transcriptome and metabolome of purple and green leaves of Tetrastigma hemsleyanum reveals gene expression patterns involved in anthocyanin biosynthesis

by Zhu, Weidong , Lu, Qiujun , Wu, Qifeng , Qian, Lihua , Yan, Jianli , Huang, Yuqing , Wang, Xianbo , Qiu, Jieren , Ruan, Songlin

2020

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Journal Article

Integrated analysis of the transcriptome and metabolome of purple and green leaves of Tetrastigma hemsleyanum reveals gene expression patterns involved in anthocyanin biosynthesis

Zhu, Weidong,

Lu, Qiujun,

Wu, Qifeng,

Qian, Lihua,

Yan, Jianli,

Huang, Yuqing,

Wang, Xianbo,

Qiu, Jieren,

Ruan, Songlin

2020

Overview

To gain better insight into the regulatory networks of anthocyanin biosynthesis, an integrated analysis of the metabolome and transcriptome in purple and green leaves of Tetrastigma hemsleyanum was conducted. Transcript and metabolite profiles were archived by RNA-sequencing data analysis and LC-ESI-MS/MS, respectively. There were 209 metabolites and 4211 transcripts that were differentially expressed between purple and green leaves. Correlation tests of anthocyanin contents and transcriptional changes showed 141 significant correlations (Pearson correlation coefficient >0.8) between 16 compounds and 14 transcripts involved in the anthocyanin biosynthesis pathway. Some novel genes and metabolites were discovered as potential candidate targets for the improvement of anthocyanin content and superior cultivars.

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Publisher

Public Library of Science,Public Library of Science (PLoS)

Subject

/ Anthocyanins - genetics

/ Anthocyanins - metabolism

/ Biology and Life Sciences