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Comprehensive pathogen diagnostics in wild fish populations using blood-based molecular strategies: an Atlantic herring case study
by
St-Pierre, Yves
, Fronton, Fanny
, Caza, France
, Robert, Dominique
, Ennia, Lina
in
631/158
/ 631/326
/ 631/337
/ 692/699
/ 704/158
/ Atlantic herring
/ Blood
/ Climate change
/ Climate studies
/ Clupea harengus
/ Coastal zone
/ Erythrocytic necrosis virus
/ Fish
/ Fish diseases
/ Fish populations
/ FTA cards
/ Humanities and Social Sciences
/ Ichthyophonus
/ Infections
/ Marine ecosystems
/ Molecular weight
/ Mortality
/ multidisciplinary
/ Parasites
/ Pathogens
/ Replication
/ Ribonucleic acid
/ RNA
/ Science
/ Science (multidisciplinary)
/ Spatial analysis
/ Transcriptomes
/ Transcriptomics
/ Viruses
2025
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Comprehensive pathogen diagnostics in wild fish populations using blood-based molecular strategies: an Atlantic herring case study
by
St-Pierre, Yves
, Fronton, Fanny
, Caza, France
, Robert, Dominique
, Ennia, Lina
in
631/158
/ 631/326
/ 631/337
/ 692/699
/ 704/158
/ Atlantic herring
/ Blood
/ Climate change
/ Climate studies
/ Clupea harengus
/ Coastal zone
/ Erythrocytic necrosis virus
/ Fish
/ Fish diseases
/ Fish populations
/ FTA cards
/ Humanities and Social Sciences
/ Ichthyophonus
/ Infections
/ Marine ecosystems
/ Molecular weight
/ Mortality
/ multidisciplinary
/ Parasites
/ Pathogens
/ Replication
/ Ribonucleic acid
/ RNA
/ Science
/ Science (multidisciplinary)
/ Spatial analysis
/ Transcriptomes
/ Transcriptomics
/ Viruses
2025
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Comprehensive pathogen diagnostics in wild fish populations using blood-based molecular strategies: an Atlantic herring case study
by
St-Pierre, Yves
, Fronton, Fanny
, Caza, France
, Robert, Dominique
, Ennia, Lina
in
631/158
/ 631/326
/ 631/337
/ 692/699
/ 704/158
/ Atlantic herring
/ Blood
/ Climate change
/ Climate studies
/ Clupea harengus
/ Coastal zone
/ Erythrocytic necrosis virus
/ Fish
/ Fish diseases
/ Fish populations
/ FTA cards
/ Humanities and Social Sciences
/ Ichthyophonus
/ Infections
/ Marine ecosystems
/ Molecular weight
/ Mortality
/ multidisciplinary
/ Parasites
/ Pathogens
/ Replication
/ Ribonucleic acid
/ RNA
/ Science
/ Science (multidisciplinary)
/ Spatial analysis
/ Transcriptomes
/ Transcriptomics
/ Viruses
2025
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Comprehensive pathogen diagnostics in wild fish populations using blood-based molecular strategies: an Atlantic herring case study
Journal Article
Comprehensive pathogen diagnostics in wild fish populations using blood-based molecular strategies: an Atlantic herring case study
2025
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Overview
Climate change affects marine ecosystems by promoting pathogens that threaten key fish populations. To protect these, monitoring programs must adapt to manage threats and sustain fisheries. Here, we combined traditional PCR methods and transcriptomic analysis from a single drop of blood stored on FTA cards to determine the prevalence of erythrocytic necrosis virus (ENV) and the
Ichthyophonus
parasite in the Atlantic herring population. Across 2023–2024, 33% of individual blood samples tested positive for ENV and 10% for
Ichthyophonus
by PCR, with ENV-positive fish more frequently found in estuarine and coastal areas. Spatial analyses revealed a clustered distribution for ENV and a more sporadic occurrence of
Ichthyophonus
. RNA-Seq detected viral RNA fragments in ENV PCR-positive fish, revealing high levels of viral transcripts consistent with active viral replication. However, no significant changes were observed in the host blood transcriptome between infected and uninfected individuals, suggesting that ENV replication may proceed with limited systemic host transcriptional response under subclinical conditions. Overall, our study provides the first comprehensive baseline on the prevalence and molecular activity of ENV and
Ichthyophonus
in Atlantic herring, demonstrating the power of FTA-based RNA-Seq diagnostics to uncover hidden infections and informing future surveillance and management of wild fish populations.
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