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Generating brain-wide connectome using synthetic axonal morphologies
by
Petkantchin, Remy
, Markram, Henry
, Peng, Hanchuan
, Berchet, Adrien
, Kanari, Lida
in
631/114/116/1925
/ 631/114/116/2392
/ Algorithms
/ Animals
/ Axons
/ Axons - physiology
/ Axons - ultrastructure
/ Brain
/ Brain - diagnostic imaging
/ Brain - physiology
/ Clustering
/ Computer Simulation
/ Connectome - methods
/ Datasets
/ Electron microscopy
/ Humanities and Social Sciences
/ Imaging techniques
/ Magnetic Resonance Imaging
/ Mice
/ Models, Neurological
/ Morphology
/ multidisciplinary
/ Neural networks
/ Neuroimaging
/ Pyramidal cells
/ Pyramidal Cells - cytology
/ Pyramidal Cells - physiology
/ Science
/ Science (multidisciplinary)
/ Synthesis
2025
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Generating brain-wide connectome using synthetic axonal morphologies
by
Petkantchin, Remy
, Markram, Henry
, Peng, Hanchuan
, Berchet, Adrien
, Kanari, Lida
in
631/114/116/1925
/ 631/114/116/2392
/ Algorithms
/ Animals
/ Axons
/ Axons - physiology
/ Axons - ultrastructure
/ Brain
/ Brain - diagnostic imaging
/ Brain - physiology
/ Clustering
/ Computer Simulation
/ Connectome - methods
/ Datasets
/ Electron microscopy
/ Humanities and Social Sciences
/ Imaging techniques
/ Magnetic Resonance Imaging
/ Mice
/ Models, Neurological
/ Morphology
/ multidisciplinary
/ Neural networks
/ Neuroimaging
/ Pyramidal cells
/ Pyramidal Cells - cytology
/ Pyramidal Cells - physiology
/ Science
/ Science (multidisciplinary)
/ Synthesis
2025
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Generating brain-wide connectome using synthetic axonal morphologies
by
Petkantchin, Remy
, Markram, Henry
, Peng, Hanchuan
, Berchet, Adrien
, Kanari, Lida
in
631/114/116/1925
/ 631/114/116/2392
/ Algorithms
/ Animals
/ Axons
/ Axons - physiology
/ Axons - ultrastructure
/ Brain
/ Brain - diagnostic imaging
/ Brain - physiology
/ Clustering
/ Computer Simulation
/ Connectome - methods
/ Datasets
/ Electron microscopy
/ Humanities and Social Sciences
/ Imaging techniques
/ Magnetic Resonance Imaging
/ Mice
/ Models, Neurological
/ Morphology
/ multidisciplinary
/ Neural networks
/ Neuroimaging
/ Pyramidal cells
/ Pyramidal Cells - cytology
/ Pyramidal Cells - physiology
/ Science
/ Science (multidisciplinary)
/ Synthesis
2025
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Generating brain-wide connectome using synthetic axonal morphologies
Journal Article
Generating brain-wide connectome using synthetic axonal morphologies
2025
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Overview
Recent experimental advancements, including electron microscopy reconstructions, have produced detailed connectivity data for local brain regions. On the other hand, for inter-regional connectivity, large-scale imaging techniques such as MRI are best suited to provide insights. However, understanding the relationship between local and long-range connectivity is essential for studying both healthy and pathological conditions of the brain. Leveraging a dataset of whole-brain axonal reconstructions, we present a technique to predict whole-brain connectivity at single cell level for pyramidal cells in the cortex by generating detailed whole-brain axonal morphologies from sparse experimental data. The computationally generated axons accurately reproduce the local and global morphological properties of experimental reconstructions. Furthermore, the computationally synthesized axons generate large-scale inter-regional connectivity, defining the projectome and the connectome of the brain, thereby enabling the in silico experimentation of large brain regions.
In this work, the authors present a method for numerically synthesizing long-range axonal morphologies of the mouse brain, by leveraging recent advances in unsupervised clustering techniques and clustering input axons by their projecting pattern.
Publisher
Nature Publishing Group UK,Nature Publishing Group,Nature Portfolio
Subject
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