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TrackMate 7: integrating state-of-the-art segmentation algorithms into tracking pipelines
by
Conway, James R. W.
, Rigaud, Stéphane U.
, Duménil, Guillaume
, Phan, Minh-Son
, Roy, Nathan H.
, Laine, Romain F.
, Tinevez, Jean-Yves
, Pylvänäinen, Joanna W.
, Ershov, Dmitry
, Le Blanc, Laure
, Bonazzi, Daria
, Jacquemet, Guillaume
, Charles-Orszag, Arthur
in
631/114/1564
/ 631/114/794
/ Algorithms
/ Application programming interface
/ Automation
/ Bioinformatics
/ Biological Microscopy
/ Biological research
/ Biological Techniques
/ Biomedical and Life Sciences
/ Biomedical Engineering/Biotechnology
/ Breast cancer
/ Brief Communication
/ Computer Science
/ Deep learning
/ Image processing
/ Image segmentation
/ Life Sciences
/ Machine learning
/ Microscopy
/ Morphology
/ Pipelines
/ Proteomics
/ Sensors
/ Software
/ Tracking
2022
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TrackMate 7: integrating state-of-the-art segmentation algorithms into tracking pipelines
by
Conway, James R. W.
, Rigaud, Stéphane U.
, Duménil, Guillaume
, Phan, Minh-Son
, Roy, Nathan H.
, Laine, Romain F.
, Tinevez, Jean-Yves
, Pylvänäinen, Joanna W.
, Ershov, Dmitry
, Le Blanc, Laure
, Bonazzi, Daria
, Jacquemet, Guillaume
, Charles-Orszag, Arthur
in
631/114/1564
/ 631/114/794
/ Algorithms
/ Application programming interface
/ Automation
/ Bioinformatics
/ Biological Microscopy
/ Biological research
/ Biological Techniques
/ Biomedical and Life Sciences
/ Biomedical Engineering/Biotechnology
/ Breast cancer
/ Brief Communication
/ Computer Science
/ Deep learning
/ Image processing
/ Image segmentation
/ Life Sciences
/ Machine learning
/ Microscopy
/ Morphology
/ Pipelines
/ Proteomics
/ Sensors
/ Software
/ Tracking
2022
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TrackMate 7: integrating state-of-the-art segmentation algorithms into tracking pipelines
by
Conway, James R. W.
, Rigaud, Stéphane U.
, Duménil, Guillaume
, Phan, Minh-Son
, Roy, Nathan H.
, Laine, Romain F.
, Tinevez, Jean-Yves
, Pylvänäinen, Joanna W.
, Ershov, Dmitry
, Le Blanc, Laure
, Bonazzi, Daria
, Jacquemet, Guillaume
, Charles-Orszag, Arthur
in
631/114/1564
/ 631/114/794
/ Algorithms
/ Application programming interface
/ Automation
/ Bioinformatics
/ Biological Microscopy
/ Biological research
/ Biological Techniques
/ Biomedical and Life Sciences
/ Biomedical Engineering/Biotechnology
/ Breast cancer
/ Brief Communication
/ Computer Science
/ Deep learning
/ Image processing
/ Image segmentation
/ Life Sciences
/ Machine learning
/ Microscopy
/ Morphology
/ Pipelines
/ Proteomics
/ Sensors
/ Software
/ Tracking
2022
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TrackMate 7: integrating state-of-the-art segmentation algorithms into tracking pipelines
Journal Article
TrackMate 7: integrating state-of-the-art segmentation algorithms into tracking pipelines
2022
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Overview
TrackMate is an automated tracking software used to analyze bioimages and is distributed as a Fiji plugin. Here, we introduce a new version of TrackMate. TrackMate 7 is built to address the broad spectrum of modern challenges researchers face by integrating state-of-the-art segmentation algorithms into tracking pipelines. We illustrate qualitatively and quantitatively that these new capabilities function effectively across a wide range of bio-imaging experiments.
TrackMate 7 combines the benefits of machine and deep learning-based image segmentation with accurate object tracking to enable improved 2D and 3D tracking of diverse objects in biological research.
Publisher
Nature Publishing Group US,Nature Publishing Group
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