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Integrated analysis of global proteome, phosphoproteome and glycoproteome enables complementary interpretation of disease-related protein networks
by
Hokeun Kim
, Jae Hun Jung
, Hee Jung Jung
, Hookeun Lee
, Sang Won Lee
, Jong-Moon Park
, Seunghoon Back
, Hark Kyun Kim
, Ji-Hwan Park
, Hangyeore Lee
, Kwang Pyo Kim
, Daehee Hwang
, Dong Gi Mun
, Jingi Bae
in
631/1647/2067
/ 631/61/475/2290
/ Adult
/ CHROMATOGRAPHY
/ Cluster Analysis
/ CROSS-TALK
/ Data processing
/ Female
/ Gastric cancer
/ Glycopeptides
/ Glycoproteins
/ Glycoproteins - metabolism
/ Glycosylation
/ Humanities and Social Sciences
/ Humans
/ IN-VIVO
/ INTERACTOME
/ LECTIN AFFINITY
/ Male
/ MASS-SPECTROMETRY
/ Middle Aged
/ Models, Biological
/ multidisciplinary
/ Peptides
/ Phosphoproteins
/ Phosphoproteins - metabolism
/ PHOSPHORYLATION
/ Post-translation
/ POSTTRANSLATIONAL MODIFICATIONS
/ Protein expression
/ Protein Interaction Mapping
/ Protein Interaction Mapping - methods
/ Protein Interaction Maps
/ Proteins
/ Proteome
/ Proteomics
/ Proteomics - methods
/ SCALE MAP
/ Science
/ Stomach Neoplasms
/ Stomach Neoplasms - diagnosis
/ Stomach Neoplasms - metabolism
2015
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Integrated analysis of global proteome, phosphoproteome and glycoproteome enables complementary interpretation of disease-related protein networks
by
Hokeun Kim
, Jae Hun Jung
, Hee Jung Jung
, Hookeun Lee
, Sang Won Lee
, Jong-Moon Park
, Seunghoon Back
, Hark Kyun Kim
, Ji-Hwan Park
, Hangyeore Lee
, Kwang Pyo Kim
, Daehee Hwang
, Dong Gi Mun
, Jingi Bae
in
631/1647/2067
/ 631/61/475/2290
/ Adult
/ CHROMATOGRAPHY
/ Cluster Analysis
/ CROSS-TALK
/ Data processing
/ Female
/ Gastric cancer
/ Glycopeptides
/ Glycoproteins
/ Glycoproteins - metabolism
/ Glycosylation
/ Humanities and Social Sciences
/ Humans
/ IN-VIVO
/ INTERACTOME
/ LECTIN AFFINITY
/ Male
/ MASS-SPECTROMETRY
/ Middle Aged
/ Models, Biological
/ multidisciplinary
/ Peptides
/ Phosphoproteins
/ Phosphoproteins - metabolism
/ PHOSPHORYLATION
/ Post-translation
/ POSTTRANSLATIONAL MODIFICATIONS
/ Protein expression
/ Protein Interaction Mapping
/ Protein Interaction Mapping - methods
/ Protein Interaction Maps
/ Proteins
/ Proteome
/ Proteomics
/ Proteomics - methods
/ SCALE MAP
/ Science
/ Stomach Neoplasms
/ Stomach Neoplasms - diagnosis
/ Stomach Neoplasms - metabolism
2015
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Integrated analysis of global proteome, phosphoproteome and glycoproteome enables complementary interpretation of disease-related protein networks
by
Hokeun Kim
, Jae Hun Jung
, Hee Jung Jung
, Hookeun Lee
, Sang Won Lee
, Jong-Moon Park
, Seunghoon Back
, Hark Kyun Kim
, Ji-Hwan Park
, Hangyeore Lee
, Kwang Pyo Kim
, Daehee Hwang
, Dong Gi Mun
, Jingi Bae
in
631/1647/2067
/ 631/61/475/2290
/ Adult
/ CHROMATOGRAPHY
/ Cluster Analysis
/ CROSS-TALK
/ Data processing
/ Female
/ Gastric cancer
/ Glycopeptides
/ Glycoproteins
/ Glycoproteins - metabolism
/ Glycosylation
/ Humanities and Social Sciences
/ Humans
/ IN-VIVO
/ INTERACTOME
/ LECTIN AFFINITY
/ Male
/ MASS-SPECTROMETRY
/ Middle Aged
/ Models, Biological
/ multidisciplinary
/ Peptides
/ Phosphoproteins
/ Phosphoproteins - metabolism
/ PHOSPHORYLATION
/ Post-translation
/ POSTTRANSLATIONAL MODIFICATIONS
/ Protein expression
/ Protein Interaction Mapping
/ Protein Interaction Mapping - methods
/ Protein Interaction Maps
/ Proteins
/ Proteome
/ Proteomics
/ Proteomics - methods
/ SCALE MAP
/ Science
/ Stomach Neoplasms
/ Stomach Neoplasms - diagnosis
/ Stomach Neoplasms - metabolism
2015
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Integrated analysis of global proteome, phosphoproteome and glycoproteome enables complementary interpretation of disease-related protein networks
Journal Article
Integrated analysis of global proteome, phosphoproteome and glycoproteome enables complementary interpretation of disease-related protein networks
2015
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Overview
Multi-dimensional proteomic analyses provide different layers of protein information, including protein abundance and post-translational modifications. Here, we report an integrated analysis of protein expression, phosphorylation and N-glycosylation by serial enrichments of phosphorylation and N-glycosylation (SEPG) from the same tissue samples. On average, the SEPG identified 142,106 unmodified peptides of 8,625 protein groups, 18,846 phosphopeptides (15,647 phosphosites) and 4,019 N-glycopeptides (2,634 N-glycosites) in tumor and adjacent normal tissues from three gastric cancer patients. The combined analysis of these data showed that the integrated analysis additively improved the coverages of gastric cancer-related protein networks; phosphoproteome and N-glycoproteome captured predominantly low abundant signal proteins and membranous or secreted proteins, respectively, while global proteome provided abundances for general population of the proteome. Therefore, our results demonstrate that the SEPG can serve as an effective approach for multi-dimensional proteome analyses and the holistic profiles of protein expression and PTMs enabled improved interpretation of disease-related networks by providing complementary information.
Publisher
Springer Science and Business Media LLC,Nature Publishing Group UK,Nature Publishing Group
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