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The widely used Ucp1-Cre transgene elicits complex developmental and metabolic phenotypes
The widely used Ucp1-Cre transgene elicits complex developmental and metabolic phenotypes
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The widely used Ucp1-Cre transgene elicits complex developmental and metabolic phenotypes
The widely used Ucp1-Cre transgene elicits complex developmental and metabolic phenotypes

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The widely used Ucp1-Cre transgene elicits complex developmental and metabolic phenotypes
The widely used Ucp1-Cre transgene elicits complex developmental and metabolic phenotypes
Journal Article

The widely used Ucp1-Cre transgene elicits complex developmental and metabolic phenotypes

2025
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Overview
Bacterial artificial chromosome transgenic models, including most Cre-recombinases , enable potent interrogation of gene function in vivo but require rigorous validation as limitations emerge. Due to its high relevance to metabolic studies, we perform comprehensive analysis of the Ucp1-Cre Evdr line which is widely used for brown fat research. Hemizygotes exhibit major brown and white fat transcriptomic dysregulation, indicating potential altered tissue function. Ucp1-Cre Evdr homozygotes also show high mortality, tissue specific growth defects, and craniofacial abnormalities. Mapping the transgene insertion site reveals insertion in chromosome 1 accompanied by large genomic alterations disrupting several genes expressed in a range of tissues. Notably, Ucp1-Cre Evdr transgene retains an extra Ucp1 gene copy that may be highly expressed under high thermogenic burden. Our multi-faceted analysis highlights a complex phenotype arising from the presence of the Ucp1-Cre Evdr transgene independently of intended genetic manipulations. Overall, comprehensive validation of transgenic mice is imperative to maximize discovery while mitigating unexpected, off-target effects. UCP1 is involved in regulating thermogenesis, and the Ucp1-Cre mouse line has been widely used for studying brown fat. Here they show that this mouse line carries an extra copy of the Ucp1 gene and displays unexpected changes in fat tissue function. Researchers should be cautious when interpreting studies using this model.