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Chromosome-scale genome assembly and de novo annotation of Alopecurus aequalis
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Chromosome-scale genome assembly and de novo annotation of Alopecurus aequalis
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Journal Article
Chromosome-scale genome assembly and de novo annotation of Alopecurus aequalis
2024
Overview
Alopecurus aequalis
is a winter annual or short-lived perennial bunchgrass which has in recent years emerged as the dominant agricultural weed of barley and wheat in certain regions of China and Japan, causing significant yield losses. Its robust tillering capacity and high fecundity, combined with the development of both target and non-target-site resistance to herbicides means it is a formidable challenge to food security. Here we report on a chromosome-scale assembly of
A. aequalis
with a genome size of 2.83 Gb. The genome contained 33,758 high-confidence protein-coding genes with functional annotation. Comparative genomics revealed that the genome structure of
A. aequalis
is more similar to
Hordeum vulgare
rather than the more closely related
Alopecurus myosuroides
.
Publisher
Nature Publishing Group UK,Nature Publishing Group,Nature Portfolio
Subject
