Journal Article

Transcriptome and single-cell analysis reveal disulfidptosis-related modification patterns of tumor microenvironment and prognosis in osteosarcoma

Wang, Linbang, Yan, Ziqiang, Liu, Yu, Li, Qiaochu, Dou, Xinyu, Tai, Jiaojiao, Yang, Hongjuan, Liu, Jingkun, Liu, Xiaoguang

2024

Overview

Osteosarcoma (OS) is the most common malignant bone tumor with high pathological heterogeneity. Our study aimed to investigate disulfidptosis-related modification patterns in OS and their relationship with survival outcomes in patients with OS. We analyzed the single-cell-level expression profiles of disulfidptosis-related genes (DSRGs) in both OS microenvironment and OS subclusters, and HMGB1 was found to be crucial for intercellular regulation of OS disulfidptosis. Next, we explored the molecular clusters of OS based on DSRGs and related immune cell infiltration using transcriptome data. Subsequently, the hub genes of disulfidptosis in OS were screened by applying multiple machine models. In vitro and patient experiments validated our results. Three main disulfidptosis-related molecular clusters were defined in OS, and immune infiltration analysis suggested high immune heterogeneity between distinct clusters. The in vitro experiment confirmed decreased cell viability of OS after ACTB silencing and higher expression of ACTB in patients with lower immune scores. Our study systematically revealed the underlying relationship between disulfidptosis and OS at the single-cell level, identified disulfidptosis-related subtypes, and revealed the potential role of ACTB expression in OS disulfidptosis.

• Publisher: Nature Publishing Group UK,Nature Publishing Group,Nature Portfolio
• Subject: 631/67/1344 / 631/67/1857 / 631/67/327 / ACTB / Actins - genetics / Actins - metabolism / Bone cancer / Bone Neoplasms - genetics / Bone Neoplasms - metabolism / Bone Neoplasms - mortality / Bone Neoplasms - pathology / Bone tumors / Cell Line, Tumor / Cell viability / Disulfidptosis / Gene Expression Profiling / Gene Expression Regulation, Neoplastic / Heterogeneity / HMGB1 / HMGB1 protein / HMGB1 Protein - genetics / HMGB1 Protein - metabolism / Humanities and Social Sciences / Humans / Infiltration / Medical prognosis / Metastases / multidisciplinary / Osteosarcoma / Osteosarcoma - genetics / Osteosarcoma - metabolism / Osteosarcoma - mortality / Osteosarcoma - pathology / Prognosis / Sarcoma / Science / Science (multidisciplinary) / Single-Cell Analysis / Transcriptome / Transcriptomes / Tumor microenvironment / Tumor Microenvironment - genetics