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Smad4 and TGFβ1 dependent gene expression signatures in conditional intestinal adenoma, organoids and colorectal cancer
by
Hughes, Jennifer
, Barnes, David J.
, Imianowski, Charlotte J.
, Carter, Emma J.
, Surakhy, Mirvat
, Morreau, Hans
, Sanegre, Sabina
, Hassan, Andrew Bassim
, Matheson, Julia
, Bühnemann, Claudia
, Metz, Paul
in
631/114
/ 631/208
/ 631/67
/ 631/80
/ Adenoma
/ Adenoma - genetics
/ Adenoma - metabolism
/ Adenoma - pathology
/ Animals
/ Apc
/ Cancer
/ Cell death
/ Colorectal cancer
/ Colorectal Neoplasms - genetics
/ Colorectal Neoplasms - metabolism
/ Colorectal Neoplasms - pathology
/ Gene expression
/ Gene Expression Profiling
/ Gene Expression Regulation, Neoplastic
/ Humanities and Social Sciences
/ Humans
/ Id1
/ Intestinal Neoplasms - genetics
/ Intestinal Neoplasms - metabolism
/ Intestinal Neoplasms - pathology
/ Intestine
/ Metastases
/ Mice
/ multidisciplinary
/ Organoids
/ Organoids - metabolism
/ Organoids - pathology
/ Phenotypes
/ Science
/ Science (multidisciplinary)
/ Smad2 protein
/ Smad4
/ Smad4 protein
/ Smad4 Protein - genetics
/ Smad4 Protein - metabolism
/ Small intestine
/ TGF-β1
/ Transcriptome
/ Transforming Growth Factor beta1 - genetics
/ Transforming Growth Factor beta1 - metabolism
/ Transforming growth factor-b
/ Transforming growth factor-b1
/ Tumors
2025
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Smad4 and TGFβ1 dependent gene expression signatures in conditional intestinal adenoma, organoids and colorectal cancer
by
Hughes, Jennifer
, Barnes, David J.
, Imianowski, Charlotte J.
, Carter, Emma J.
, Surakhy, Mirvat
, Morreau, Hans
, Sanegre, Sabina
, Hassan, Andrew Bassim
, Matheson, Julia
, Bühnemann, Claudia
, Metz, Paul
in
631/114
/ 631/208
/ 631/67
/ 631/80
/ Adenoma
/ Adenoma - genetics
/ Adenoma - metabolism
/ Adenoma - pathology
/ Animals
/ Apc
/ Cancer
/ Cell death
/ Colorectal cancer
/ Colorectal Neoplasms - genetics
/ Colorectal Neoplasms - metabolism
/ Colorectal Neoplasms - pathology
/ Gene expression
/ Gene Expression Profiling
/ Gene Expression Regulation, Neoplastic
/ Humanities and Social Sciences
/ Humans
/ Id1
/ Intestinal Neoplasms - genetics
/ Intestinal Neoplasms - metabolism
/ Intestinal Neoplasms - pathology
/ Intestine
/ Metastases
/ Mice
/ multidisciplinary
/ Organoids
/ Organoids - metabolism
/ Organoids - pathology
/ Phenotypes
/ Science
/ Science (multidisciplinary)
/ Smad2 protein
/ Smad4
/ Smad4 protein
/ Smad4 Protein - genetics
/ Smad4 Protein - metabolism
/ Small intestine
/ TGF-β1
/ Transcriptome
/ Transforming Growth Factor beta1 - genetics
/ Transforming Growth Factor beta1 - metabolism
/ Transforming growth factor-b
/ Transforming growth factor-b1
/ Tumors
2025
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Smad4 and TGFβ1 dependent gene expression signatures in conditional intestinal adenoma, organoids and colorectal cancer
by
Hughes, Jennifer
, Barnes, David J.
, Imianowski, Charlotte J.
, Carter, Emma J.
, Surakhy, Mirvat
, Morreau, Hans
, Sanegre, Sabina
, Hassan, Andrew Bassim
, Matheson, Julia
, Bühnemann, Claudia
, Metz, Paul
in
631/114
/ 631/208
/ 631/67
/ 631/80
/ Adenoma
/ Adenoma - genetics
/ Adenoma - metabolism
/ Adenoma - pathology
/ Animals
/ Apc
/ Cancer
/ Cell death
/ Colorectal cancer
/ Colorectal Neoplasms - genetics
/ Colorectal Neoplasms - metabolism
/ Colorectal Neoplasms - pathology
/ Gene expression
/ Gene Expression Profiling
/ Gene Expression Regulation, Neoplastic
/ Humanities and Social Sciences
/ Humans
/ Id1
/ Intestinal Neoplasms - genetics
/ Intestinal Neoplasms - metabolism
/ Intestinal Neoplasms - pathology
/ Intestine
/ Metastases
/ Mice
/ multidisciplinary
/ Organoids
/ Organoids - metabolism
/ Organoids - pathology
/ Phenotypes
/ Science
/ Science (multidisciplinary)
/ Smad2 protein
/ Smad4
/ Smad4 protein
/ Smad4 Protein - genetics
/ Smad4 Protein - metabolism
/ Small intestine
/ TGF-β1
/ Transcriptome
/ Transforming Growth Factor beta1 - genetics
/ Transforming Growth Factor beta1 - metabolism
/ Transforming growth factor-b
/ Transforming growth factor-b1
/ Tumors
2025
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Smad4 and TGFβ1 dependent gene expression signatures in conditional intestinal adenoma, organoids and colorectal cancer
Journal Article
Smad4 and TGFβ1 dependent gene expression signatures in conditional intestinal adenoma, organoids and colorectal cancer
2025
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Overview
TGF-β ligands suppress growth yet can paradoxically and potently promote cancer invasion and metastasis depending on downstream pathway mutational context, such as loss of Mothers against decapentaplegic homolog 4 (
Smad4
). Here, we characterised phenotypes and associated gene expression signatures in conditional murine intestinal adenoma with and without
Smad4
. Conditional
Lgr5
-CreER
T2
activation in
Apc
fl/fl
Smad4
fl/fl
mice resulted in homozygote floxed alleles
(Apc
Δ/Δ
Smad4
Δ/Δ
) and adenoma formation. The adenoma phenotype was discordant, with reduced small intestinal adenoma burden yet development of large non-metastatic caecal adenoma with nuclear localisation of phospho-Smad2/3. Derived
Apc
Δ/Δ
Smad4
Δ/Δ
adenoma organoids resisted TGF-β1 dose dependent growth arrest and cell death (IC
50
534 pM) compared to
Apc
Δ/Δ
Smad4
+/+
(IC
50
24 pM). TGF-β1 (390 pM) altered adenoma bulk mRNA expression most significantly for
Id1
low
and
Spp1
high
in
Apc
Δ/Δ
Smad4
Δ/Δ
. Single cell RNAseq of caecal adenoma identified expansion of
Lgr5
low
, Pak3
high
and
Id1
low
progenitor populations in
Apc
Δ/Δ
Smad4
Δ/Δ
. Of the 76
Smad4
and TGF-β1 dependent genes identified in
Apc
fl/fl
Smad4
fl/fl
adenoma organoids, only 7 human equivalent genes were differentially expressed in
SMAD4
mutated colorectal cancer (TCGA cohorts), including
ID1
low
.
SMAD4
low
,
ID1
low
SPP1
high
and
PAK3
high
all correlated with poorer survival. Murine adenoma identified
Smad4
dependent gene expression signatures that require further evaluation as functional biomarker classifiers of
SMAD4
mutated cancer subtypes.
Publisher
Nature Publishing Group UK,Nature Publishing Group,Nature Portfolio
Subject
/ 631/208
/ 631/67
/ 631/80
/ Adenoma
/ Animals
/ Apc
/ Cancer
/ Colorectal Neoplasms - genetics
/ Colorectal Neoplasms - metabolism
/ Colorectal Neoplasms - pathology
/ Gene Expression Regulation, Neoplastic
/ Humanities and Social Sciences
/ Humans
/ Id1
/ Intestinal Neoplasms - genetics
/ Intestinal Neoplasms - metabolism
/ Intestinal Neoplasms - pathology
/ Mice
/ Science
/ Smad4
/ TGF-β1
/ Transforming Growth Factor beta1 - genetics
/ Transforming Growth Factor beta1 - metabolism
/ Transforming growth factor-b
/ Transforming growth factor-b1
/ Tumors
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